Z. japonica Nagirizaki
Zjn_sc00049.1.g00670.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G59760.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 348 23 346 1e-90 124.4 49.7 67.2
Subject 433 105 426
Annot | Symbols: OASC, ATCS-C | O-acetylserine (thiol) lyase isoform C | chr3:22072119-22075345 REVERSE LENGTH=433
NR ref|XP_002436483.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 348 1 348 e-168 100.9 83 91.4
Subject 351 1 351
Annot hypothetical protein SORBIDRAFT_10g003480 [Sorghum bicolor] gi|241914706|gb|EER87850.1| hypothetical protein SORBIDRAFT_10g003480 [Sorghum bicolor]
IRGSP Os06t0149700-00_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 348 3 348 e-161 97.4 81.9 88.5
Subject 339 2 339
Annot
Sbicolor Sobic.010G039100.2.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 348 1 348 e-172 100.9 88.5 93.1
Subject 351 1 351
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00049.1.g00670.1.am.mkhc length: 348 aa.
IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily
method AccNumber shortName E-value location
HMMPfam PF00291 PALP 1.2e-59 35-323
superfamily SSF53686 Tryptophan 1.6e-91 29-348
IPR005856 Cysteine synthase K/M
Molecular Function GO:0004124 cysteine synthase activity    
Biological Process GO:0006535 cysteine biosynthetic process from serine    
HMMTigr TIGR01136 cysKM: 1.8e-112 35-336
IPR005859 Cysteine synthase A
Molecular Function GO:0004124 cysteine synthase activity    
Biological Process GO:0006535 cysteine biosynthetic process from serine    
HMMTigr TIGR01139 cysK: 1.6e-114 35-336
no_ID  
Gene3D G3DSA:3.40.50.1100 no description 1.9e-79 68-166
167-338
HMMPanther PTHR10314 SER/THR 2.4e-178 3-346
HMMPanther PTHR10314:SF8 CYSTEINE 2.4e-178 3-346
Seg seg seg NA 207-218
Pseudomolecule
Chromosome Start End Strand
20245323247575+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00049.1 maker exon 245323 245468 . + . ID=Zjn_sc00049.1.g00670.1.am.mkhc:exon:1
Zjn_sc00049.1 maker exon 245568 245695 . + . ID=Zjn_sc00049.1.g00670.1.am.mkhc:exon:2
Zjn_sc00049.1 maker exon 245833 246035 . + . ID=Zjn_sc00049.1.g00670.1.am.mkhc:exon:3
Zjn_sc00049.1 maker exon 246141 246266 . + . ID=Zjn_sc00049.1.g00670.1.am.mkhc:exon:4
Zjn_sc00049.1 maker exon 246475 246633 . + . ID=Zjn_sc00049.1.g00670.1.am.mkhc:exon:5
Zjn_sc00049.1 maker exon 246741 246934 . + . ID=Zjn_sc00049.1.g00670.1.am.mkhc:exon:6
Zjn_sc00049.1 maker exon 247054 247575 . + . ID=Zjn_sc00049.1.g00670.1.am.mkhc:exon:7

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