Z. japonica Nagirizaki
Zjn_sc00049.1.g00260.1.sm.mk
Sequence
-
BLAST
| TAIR10 |
AT5G23310.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
164 |
28 |
153 |
3e-46 |
160.4 |
56.1 |
66.5 |
| Subject |
263 |
60 |
222 |
|
| Annot |
| Symbols: FSD3 | Fe superoxide dismutase 3 | chr5:7850624-7852241 FORWARD LENGTH=263 |
| NR |
gb|EEE65068.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
164 |
1 |
163 |
1e-60 |
138.4 |
76.8 |
84.8 |
| Subject |
227 |
1 |
196 |
|
| Annot |
hypothetical protein OsJ_20091 [Oryza sativa Japonica Group] |
| IRGSP |
Os06t0143000-01_chr06_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
164 |
1 |
163 |
3e-59 |
155.5 |
76.8 |
84.8 |
| Subject |
255 |
1 |
224 |
|
| Annot |
|
| Sbicolor |
Sobic.010G033000.1.p|Chr10|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
164 |
1 |
153 |
1e-64 |
159.1 |
82.3 |
86.6 |
| Subject |
261 |
1 |
220 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00049.1.g00260.1.sm.mk |
length: 164 aa. |
| IPR001189 |
Manganese/iron superoxide dismutase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004784 |
superoxide dismutase activity |
|
|
| Biological Process |
GO:0006801 |
superoxide metabolic process |
|
|
| Molecular Function |
GO:0046872 |
metal ion binding |
|
|
| Biological Process |
GO:0055114 |
oxidation-reduction process |
|
|
| HMMPIR |
PIRSF000349 |
Superoxide |
3.6e-29 |
21-164 |
| HMMPanther |
PTHR11404 |
SUPEROXIDE |
1.9e-57 |
28-153 |
| IPR019831 |
Manganese/iron superoxide dismutase, N-terminal |
| Molecular Function |
GO:0004784 |
superoxide dismutase activity |
|
|
| Biological Process |
GO:0006801 |
superoxide metabolic process |
|
|
| Molecular Function |
GO:0046872 |
metal ion binding |
|
|
| Biological Process |
GO:0055114 |
oxidation-reduction process |
|
|
| HMMPfam |
PF00081 |
Sod_Fe_N |
6.1e-20 |
27-102 |
| superfamily |
SSF46609 |
Fe,Mn |
2e-27 |
28-103 |
| IPR019832 |
Manganese/iron superoxide dismutase, C-terminal |
| Molecular Function |
GO:0004784 |
superoxide dismutase activity |
|
|
| Biological Process |
GO:0006801 |
superoxide metabolic process |
|
|
| Molecular Function |
GO:0046872 |
metal ion binding |
|
|
| Biological Process |
GO:0055114 |
oxidation-reduction process |
|
|
| HMMPfam |
PF02777 |
Sod_Fe_C |
1.6e-10 |
111-155 |
| superfamily |
SSF54719 |
Fe,Mn |
3.3e-08 |
101-155 |
| IPR019833 |
Manganese/iron superoxide dismutase, binding site |
| Molecular Function |
GO:0004784 |
superoxide dismutase activity |
|
|
| Biological Process |
GO:0006801 |
superoxide metabolic process |
|
|
| Molecular Function |
GO:0046872 |
metal ion binding |
|
|
| Biological Process |
GO:0055114 |
oxidation-reduction process |
|
|
| PatternScan |
PS00088 |
SOD_MN |
NA |
142-149 |
| no_ID |
|
| Gene3D |
G3DSA:1.10.287.990 |
no description |
2.4e-18 |
35-102 |
| HMMPanther |
PTHR11404:SF8 |
SUPEROXIDE |
1.9e-57 |
28-153 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 20 | 89770 | 93415 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00049.1 |
maker_non_over |
exon |
89770 |
89850 |
. |
+ |
. |
ID=Zjn_sc00049.1.g00260.1.sm.mk:exon:1 |
| Zjn_sc00049.1 |
maker_non_over |
exon |
90415 |
90603 |
. |
+ |
. |
ID=Zjn_sc00049.1.g00260.1.sm.mk:exon:2 |
| Zjn_sc00049.1 |
maker_non_over |
exon |
90750 |
90813 |
. |
+ |
. |
ID=Zjn_sc00049.1.g00260.1.sm.mk:exon:3 |
| Zjn_sc00049.1 |
maker_non_over |
exon |
91037 |
91110 |
. |
+ |
. |
ID=Zjn_sc00049.1.g00260.1.sm.mk:exon:4 |
| Zjn_sc00049.1 |
maker_non_over |
exon |
91195 |
91221 |
. |
+ |
. |
ID=Zjn_sc00049.1.g00260.1.sm.mk:exon:5 |
| Zjn_sc00049.1 |
maker_non_over |
exon |
91294 |
91317 |
. |
+ |
. |
ID=Zjn_sc00049.1.g00260.1.sm.mk:exon:6 |
| Zjn_sc00049.1 |
maker_non_over |
exon |
93380 |
93415 |
. |
+ |
. |
ID=Zjn_sc00049.1.g00260.1.sm.mk:exon:7 |