Z. japonica Nagirizaki
Zjn_sc00048.1.g00980.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G17050.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 675 352 675 e-149 61.8 36.9 42.8
Subject 417 94 417
Annot | Symbols: SPS2 | solanesyl diphosphate synthase 2 | chr1:5829289-5831215 FORWARD LENGTH=417
NR ref|XP_004962526.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 675 247 675 0.0 63.1 51.7 53.6
Subject 426 33 426
Annot PREDICTED: probable solanesyl-diphosphate synthase 3, chloroplastic [Setaria italica]
IRGSP Os12t0271700-02_chr12_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 675 279 675 0.0 55.1 48.6 51.9
Subject 372 1 372
Annot
Sbicolor Sobic.K001400.1.p|super_11|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 675 235 675 0.0 72.4 52.1 54.7
Subject 489 86 489
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00048.1.g00980.1.am.mkhc length: 675 aa.
IPR000092 Polyprenyl synthetase
method AccNumber shortName E-value location
Biological Process GO:0008299 isoprenoid biosynthetic process    
HMMPfam PF00348 polyprenyl_synt 1.4e-67 383-619
PatternScan PS00444 POLYPRENYL_SYNTHASE_2 NA 559-571
PatternScan PS00723 POLYPRENYL_SYNTHASE_1 NA 437-451
IPR000626 Ubiquitin domain
Molecular Function GO:0005515 protein binding    
HMMPfam PF00240 ubiquitin 7.1e-11 20-72
HMMSmart SM00213 Ubiquitin 6.2 1-72
84-158
IPR008949 Terpenoid synthase
Gene3D G3DSA:1.10.600.10 no description 4.5e-99 353-673
superfamily SSF48576 Terpenoid 7.9e-89 342-675
IPR014120 Solanesyl diphosphate synthase
Biological Process GO:0015979 photosynthesis    
Molecular Function GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups    
HMMPanther PTHR12001:SF18 SOLANESYL 6.3e-245 208-675
HMMTigr TIGR02749 prenyl_cyano: 1.5e-154 352-674
IPR017446 Polyprenyl synthetase-related
HMMPanther PTHR12001 GERANYLGERANYL 6.3e-245 208-675
IPR019955 Ubiquitin supergroup
ProfileScan PS50053 UBIQUITIN_2 9.417 1-71
86-148
no_ID  
Gene3D G3DSA:3.10.20.90 no description 1.7e-05 1-71
96-149
Seg seg seg NA 212-242
259-274
352-365
superfamily SSF54236 Ubiquitin-like 8e-06 1-72
84-154
Pseudomolecule
No data.
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00048.1 maker exon 1095726 1096715 . - . ID=Zjn_sc00048.1.g00980.1.am.mkhc:exon:6
Zjn_sc00048.1 maker exon 1096793 1096920 . - . ID=Zjn_sc00048.1.g00980.1.am.mkhc:exon:5
Zjn_sc00048.1 maker exon 1097400 1097503 . - . ID=Zjn_sc00048.1.g00980.1.am.mkhc:exon:4
Zjn_sc00048.1 maker exon 1097582 1097709 . - . ID=Zjn_sc00048.1.g00980.1.am.mkhc:exon:3
Zjn_sc00048.1 maker exon 1099086 1099742 . - . ID=Zjn_sc00048.1.g00980.1.am.mkhc:exon:2
Zjn_sc00048.1 maker exon 1102477 1102938 . - . ID=Zjn_sc00048.1.g00980.1.am.mkhc:exon:1

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