Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00047.1.g03000.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00047.1)

BLAST

TAIR10	AT1G10430.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	306	1	306	e-173	100	92.8	97.4
		Subject	306	1	306
		Annot	\| Symbols: PP2A-2 \| protein phosphatase 2A-2 \| chr1:3428705-3430437 REVERSE LENGTH=306
NR	ref\|XP_002453535.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	306	1	306	e-179	100	98.7	99.7
		Subject	306	1	306
		Annot	hypothetical protein SORBIDRAFT_04g007570 [Sorghum bicolor] gi\|241933366\|gb\|EES06511.1\| hypothetical protein SORBIDRAFT_04g007570 [Sorghum bicolor]
IRGSP	Os02t0217600-02_chr02_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	306	1	306	e-180	100.3	97.7	99
		Subject	307	1	307
		Annot
Sbicolor	Sobic.004G092500.1.p\|Chr04\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	306	1	306	0.0	100	98.7	99.7
		Subject	306	1	306
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR004843	Phosphoesterase domain
Zjn_sc00047.1.g03000.1.sm.mkhc				length: 306 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0016787	hydrolase activity
HMMPfam	PF00149	Metallophos	2.9e-40	48-240
IPR006186	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
Molecular Function	GO:0016787	hydrolase activity
FPrintScan	PR00114	STPHPHTASE	7e-91	48-75 77-104 110-134 145-171 174-201 230-250 252-268
HMMSmart	SM00156	Protein	7.6e-154	20-290
PatternScan	PS00125	SER_THR_PHOSPHATASE	NA	111-116
no_ID
Gene3D	G3DSA:3.60.21.10	no description	5.4e-141	5-301
HMMPanther	PTHR11668	SERINE/THREONINE	1.7e-238	6-306
HMMPanther	PTHR11668:SF21	SERINE/THREONINE	1.7e-238	6-306
superfamily	SSF56300	Metallo-dependent	4.4e-115	6-290

Pseudomolecule

Chromosome	Start	End	Strand
8	4359398	4365001	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00047.1	maker	exon	1555546	1555918	.	+	.	ID=Zjn_sc00047.1.g03000.1.sm.mkhc:exon:1
Zjn_sc00047.1	maker	exon	1556529	1556643	.	+	.	ID=Zjn_sc00047.1.g03000.1.sm.mkhc:exon:2
Zjn_sc00047.1	maker	exon	1557191	1557299	.	+	.	ID=Zjn_sc00047.1.g03000.1.sm.mkhc:exon:3
Zjn_sc00047.1	maker	exon	1557378	1557455	.	+	.	ID=Zjn_sc00047.1.g03000.1.sm.mkhc:exon:4
Zjn_sc00047.1	maker	exon	1559881	1560072	.	+	.	ID=Zjn_sc00047.1.g03000.1.sm.mkhc:exon:5
Zjn_sc00047.1	maker	exon	1560399	1561149	.	+	.	ID=Zjn_sc00047.1.g03000.1.sm.mkhc:exon:6