Z. japonica Nagirizaki
Zjn_sc00047.1.g01620.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G53120.5 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 315 4 292 e-106 114 65.4 75.2
Subject 359 3 340
Annot | Symbols: SPDS3, SPMS | spermidine synthase 3 | chr5:21535429-21537653 FORWARD LENGTH=359
NR ref|XP_004951294.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 315 1 315 e-149 122.5 90.8 94.9
Subject 386 1 386
Annot PREDICTED: spermine synthase-like [Setaria italica]
IRGSP Os06t0528600-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 315 1 292 e-128 122.9 78.1 85.1
Subject 387 1 339
Annot
Sbicolor Sobic.004G113100.2.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 315 15 315 e-149 122.5 85.7 89.5
Subject 386 15 386
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00047.1.g01620.1.sm.mkhc length: 315 aa.
IPR001045 Spermidine/spermine synthases family
method AccNumber shortName E-value location
Molecular Function GO:0003824 catalytic activity    
HAMAP MF_00198 Spermidine_synth 23.953 51-312
HMMPanther PTHR11558 SPERMIDINE/SPERMINE 1e-125 71-259
HMMPfam PF01564 Spermine_synth 4e-76 72-261
PatternScan PS01330 SPERMIDINE_SYNTHASE_1 NA 145-158
ProfileScan PS51006 SPERMIDINE_SYNTHASE_2 78.453 69-315
no_ID  
Gene3D G3DSA:2.30.140.10 no description 1.5e-25 54-118
Gene3D G3DSA:3.40.50.150 no description 9.2e-64 123-261
HMMPanther PTHR11558:SF11 SPERMIDINE 1e-125 71-259
Seg seg seg NA 149-154
superfamily SSF53335 S-adenosyl-L-methionine-dependent 1.4e-72 52-289
Pseudomolecule
Chromosome Start End Strand
836315853636823+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00047.1 maker exon 827733 827919 . + . ID=Zjn_sc00047.1.g01620.1.sm.mkhc:exon:1
Zjn_sc00047.1 maker exon 828038 828082 . + . ID=Zjn_sc00047.1.g01620.1.sm.mkhc:exon:2
Zjn_sc00047.1 maker exon 828731 828807 . + . ID=Zjn_sc00047.1.g01620.1.sm.mkhc:exon:3
Zjn_sc00047.1 maker exon 828886 829008 . + . ID=Zjn_sc00047.1.g01620.1.sm.mkhc:exon:4
Zjn_sc00047.1 maker exon 829219 829323 . + . ID=Zjn_sc00047.1.g01620.1.sm.mkhc:exon:5
Zjn_sc00047.1 maker exon 829409 829481 . + . ID=Zjn_sc00047.1.g01620.1.sm.mkhc:exon:6
Zjn_sc00047.1 maker exon 829565 829636 . + . ID=Zjn_sc00047.1.g01620.1.sm.mkhc:exon:7
Zjn_sc00047.1 maker exon 829911 830000 . + . ID=Zjn_sc00047.1.g01620.1.sm.mkhc:exon:8
Zjn_sc00047.1 maker exon 830900 830994 . + . ID=Zjn_sc00047.1.g01620.1.sm.mkhc:exon:9
Zjn_sc00047.1 maker exon 831740 832971 . + . ID=Zjn_sc00047.1.g01620.1.sm.mkhc:exon:10

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