Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00047.1.g01090.1.am.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00047.1)

BLAST

TAIR10	AT3G24620.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	521	67	521	e-151	100.4	55.1	65.3
		Subject	523	70	523
		Annot	\| Symbols: ATROPGEF8, ROPGEF8 \| RHO guanyl-nucleotide exchange factor 8 \| chr3:8980695-8982793 REVERSE LENGTH=523
NR	ref\|XP_002453678.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	521	1	521	0.0	99.6	89.8	94.2
		Subject	519	1	519
		Annot	hypothetical protein SORBIDRAFT_04g010270 [Sorghum bicolor] gi\|241933509\|gb\|EES06654.1\| hypothetical protein SORBIDRAFT_04g010270 [Sorghum bicolor]
IRGSP	Os02t0272300-01_chr02_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	521	1	521	0.0	98.5	85	90.4
		Subject	513	1	513
		Annot
Sbicolor	Sobic.004G123100.1.p\|Chr04\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	521	1	521	0.0	99.6	89.8	94.2
		Subject	519	1	519
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR005512	PRONE domain
Zjn_sc00047.1.g01090.1.am.mk				length: 521 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005089	Rho guanyl-nucleotide exchange factor activity
HMMPfam	PF03759	PRONE	8e-173	75-418
ProfileScan	PS51334	PRONE	107.929	68-425
no_ID
Coil	coil	coiled-coil	NA	414-435
HMMPanther	PTHR32372	FAMILY	1.6e-288	71-520
HMMPanther	PTHR32372:SF0	SUBFAMILY	1.6e-288	71-520
Seg	seg	seg	NA	21-27 44-50 410-445

Pseudomolecule

Chromosome	Start	End	Strand
8	3357252	3359521	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00047.1	maker_non_over	exon	553400	553816	.	-	.	ID=Zjn_sc00047.1.g01090.1.am.mk:exon:7
Zjn_sc00047.1	maker_non_over	exon	553894	554214	.	-	.	ID=Zjn_sc00047.1.g01090.1.am.mk:exon:6
Zjn_sc00047.1	maker_non_over	exon	554347	554598	.	-	.	ID=Zjn_sc00047.1.g01090.1.am.mk:exon:5
Zjn_sc00047.1	maker_non_over	exon	554730	554804	.	-	.	ID=Zjn_sc00047.1.g01090.1.am.mk:exon:4
Zjn_sc00047.1	maker_non_over	exon	554880	555151	.	-	.	ID=Zjn_sc00047.1.g01090.1.am.mk:exon:3
Zjn_sc00047.1	maker_non_over	exon	555244	555549	.	-	.	ID=Zjn_sc00047.1.g01090.1.am.mk:exon:2
Zjn_sc00047.1	maker_non_over	exon	555582	555669	.	-	.	ID=Zjn_sc00047.1.g01090.1.am.mk:exon:1