Z. japonica Nagirizaki
Zjn_sc00045.1.g03490.1.am.mkhc
Sequence
-
BLAST
| TAIR10 |
AT1G30330.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
415 |
15 |
385 |
0.0 |
224.8 |
80 |
84.1 |
| Subject |
933 |
16 |
386 |
|
| Annot |
| Symbols: ARF6 | auxin response factor 6 | chr1:10686125-10690036 REVERSE LENGTH=933 |
| NR |
gb|ADG43150.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
415 |
1 |
385 |
0.0 |
218.1 |
88.2 |
89.9 |
| Subject |
905 |
1 |
384 |
|
| Annot |
auxin response factor 16 [Zea mays] |
| IRGSP |
Os02t0164900-02_chr02_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
415 |
12 |
393 |
0.0 |
218.8 |
86 |
88.4 |
| Subject |
908 |
20 |
401 |
|
| Annot |
|
| Sbicolor |
Sobic.004G051900.2.p|Chr04|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
415 |
13 |
393 |
0.0 |
219.5 |
87.7 |
89.2 |
| Subject |
911 |
21 |
401 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00045.1.g03490.1.am.mkhc |
length: 415 aa. |
| IPR003311 |
AUX/IAA protein |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005634 |
nucleus |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| HMMPfam |
PF02309 |
AUX_IAA |
6.3e-05 |
387-415 |
| IPR003340 |
B3 DNA binding domain |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| HMMPfam |
PF02362 |
B3 |
3.6e-22 |
126-227 |
| HMMSmart |
SM01019 |
B3 |
4.9e-25 |
126-228 |
| ProfileScan |
PS50863 |
B3 |
13.155 |
126-228 |
| IPR010525 |
Auxin response factor |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Cellular Component |
GO:0005634 |
nucleus |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| Biological Process |
GO:0009725 |
response to hormone stimulus |
|
|
| HMMPfam |
PF06507 |
Auxin_resp |
3.5e-36 |
252-335 |
| IPR011525 |
Aux/IAA-ARF-dimerisation |
| Molecular Function |
GO:0046983 |
protein dimerization activity |
|
|
| ProfileScan |
PS50962 |
IAA_ARF |
10.420 |
393-415 |
| IPR015300 |
DNA-binding pseudobarrel domain |
| Gene3D |
G3DSA:2.40.330.10 |
no description |
1.9e-42 |
119-241 |
| superfamily |
SSF101936 |
DNA-binding |
3.9e-55 |
109-256 |
| no_ID |
|
| HMMPanther |
PTHR31384 |
FAMILY |
1.5e-221 |
17-388 |
| Seg |
seg |
seg |
NA |
250-256 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 7 | 1067570 | 1072107 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00045.1 |
maker |
exon |
1570519 |
1570613 |
. |
- |
. |
ID=Zjn_sc00045.1.g03490.1.am.mkhc:exon:12 |
| Zjn_sc00045.1 |
maker |
exon |
1572088 |
1572235 |
. |
- |
. |
ID=Zjn_sc00045.1.g03490.1.am.mkhc:exon:11 |
| Zjn_sc00045.1 |
maker |
exon |
1572442 |
1572517 |
. |
- |
. |
ID=Zjn_sc00045.1.g03490.1.am.mkhc:exon:10 |
| Zjn_sc00045.1 |
maker |
exon |
1572718 |
1572840 |
. |
- |
. |
ID=Zjn_sc00045.1.g03490.1.am.mkhc:exon:9 |
| Zjn_sc00045.1 |
maker |
exon |
1572911 |
1573075 |
. |
- |
. |
ID=Zjn_sc00045.1.g03490.1.am.mkhc:exon:8 |
| Zjn_sc00045.1 |
maker |
exon |
1573182 |
1573272 |
. |
- |
. |
ID=Zjn_sc00045.1.g03490.1.am.mkhc:exon:7 |
| Zjn_sc00045.1 |
maker |
exon |
1573392 |
1573476 |
. |
- |
. |
ID=Zjn_sc00045.1.g03490.1.am.mkhc:exon:6 |
| Zjn_sc00045.1 |
maker |
exon |
1573584 |
1573739 |
. |
- |
. |
ID=Zjn_sc00045.1.g03490.1.am.mkhc:exon:5 |
| Zjn_sc00045.1 |
maker |
exon |
1573838 |
1573894 |
. |
- |
. |
ID=Zjn_sc00045.1.g03490.1.am.mkhc:exon:4 |
| Zjn_sc00045.1 |
maker |
exon |
1573985 |
1574083 |
. |
- |
. |
ID=Zjn_sc00045.1.g03490.1.am.mkhc:exon:3 |
| Zjn_sc00045.1 |
maker |
exon |
1574301 |
1574500 |
. |
- |
. |
ID=Zjn_sc00045.1.g03490.1.am.mkhc:exon:2 |
| Zjn_sc00045.1 |
maker |
exon |
1574524 |
1575056 |
. |
- |
. |
ID=Zjn_sc00045.1.g03490.1.am.mkhc:exon:1 |