Z. japonica Nagirizaki
Zjn_sc00045.1.g03310.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G08280.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 287 30 283 5e-74 133.1 55.4 66.9
Subject 382 60 380
Annot | Symbols: HEMC | hydroxymethylbilane synthase | chr5:2663763-2665596 REVERSE LENGTH=382
NR ref|XP_003570067.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 287 1 287 e-115 124.4 84.7 90.2
Subject 357 1 357
Annot PREDICTED: porphobilinogen deaminase, chloroplastic [Brachypodium distachyon]
IRGSP Os02t0168800-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 287 6 287 e-108 124.7 81.9 86.8
Subject 358 9 358
Annot
Sbicolor Sobic.004G054500.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 287 1 287 e-111 124 82.9 88.5
Subject 356 1 356
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00045.1.g03310.1.sm.mkhc length: 287 aa.
IPR000860 Tetrapyrrole biosynthesis, hydroxymethylbilane synthase
method AccNumber shortName E-value location
Molecular Function GO:0004418 hydroxymethylbilane synthase activity    
Biological Process GO:0033014 tetrapyrrole biosynthetic process    
FPrintScan PR00151 PORPHBDMNASE 4.4e-29 90-110
121-140
169-186
HMMPIR PIRSF001438 Porphobilinogen 6.6e-95 45-287
HMMPanther PTHR11557 PORPHOBILINOGEN 2.1e-78 30-269
HMMTigr TIGR00212 hemC: 6.1e-54 47-193
IPR022417 Porphobilinogen deaminase, N-terminal
Molecular Function GO:0004418 hydroxymethylbilane synthase activity    
Biological Process GO:0033014 tetrapyrrole biosynthetic process    
HMMPfam PF01379 Porphobil_deam 7.1e-54 47-213
IPR022418 Porphobilinogen deaminase, C-terminal
Molecular Function GO:0004418 hydroxymethylbilane synthase activity    
Biological Process GO:0033014 tetrapyrrole biosynthetic process    
Gene3D G3DSA:3.30.160.40 no description 8.7e-17 198-279
HMMPfam PF03900 Porphobil_deamC 4.2e-18 203-276
superfamily SSF54782 Porphobilinogen 2.4e-20 197-287
IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site
Molecular Function GO:0004418 hydroxymethylbilane synthase activity    
Biological Process GO:0018160 peptidyl-pyrromethane cofactor linkage    
Biological Process GO:0033014 tetrapyrrole biosynthetic process    
PatternScan PS00533 PORPHOBILINOGEN_DEAM NA 208-224
no_ID  
Coil coil coiled-coil NA 58-79
Gene3D G3DSA:3.40.190.10 no description 7.4e-10 47-155
156-193
HMMPanther PTHR11557:SF0 SUBFAMILY 2.1e-78 30-269
Seg seg seg NA 29-44
superfamily SSF53850 Periplasmic 2e-49 44-215
Pseudomolecule
Chromosome Start End Strand
711450721147714+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00045.1 maker exon 1494912 1495334 . - . ID=Zjn_sc00045.1.g03310.1.sm.mkhc:exon:4
Zjn_sc00045.1 maker exon 1495425 1495602 . - . ID=Zjn_sc00045.1.g03310.1.sm.mkhc:exon:3
Zjn_sc00045.1 maker exon 1496360 1496765 . - . ID=Zjn_sc00045.1.g03310.1.sm.mkhc:exon:2
Zjn_sc00045.1 maker exon 1497394 1497554 . - . ID=Zjn_sc00045.1.g03310.1.sm.mkhc:exon:1

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