Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00045.1.g02850.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00045.1)

BLAST

TAIR10	AT3G21240.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	547	9	546	0.0	101.6	62.2	79.5
		Subject	556	14	554
		Annot	\| Symbols: 4CL2, AT4CL2 \| 4-coumarate:CoA ligase 2 \| chr3:7454497-7457314 REVERSE LENGTH=556
NR	ref\|XP_002451647.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	547	16	547	0.0	101.5	90.3	93.2
		Subject	555	25	555
		Annot	hypothetical protein SORBIDRAFT_04g005210 [Sorghum bicolor] gi\|241931478\|gb\|EES04623.1\| hypothetical protein SORBIDRAFT_04g005210 [Sorghum bicolor]
IRGSP	Os02t0177600-01_chr02_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	547	1	546	0.0	102.6	88.5	94
		Subject	561	8	546
		Annot
Sbicolor	Sobic.004G062500.1.p\|Chr04\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	547	16	547	0.0	101.5	90.3	93.2
		Subject	555	25	555
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR000873	AMP-dependent synthetase/ligase
Zjn_sc00045.1.g02850.1.sm.mkhc				length: 547 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003824	catalytic activity
Biological Process	GO:0008152	metabolic process
HMMPfam	PF00501	AMP-binding	1.5e-102	43-448
IPR020845	AMP-binding, conserved site
PatternScan	PS00455	AMP_BINDING	NA	192-203
IPR025110	AMP-binding enzyme C-terminal domain
HMMPfam	PF13193	AMP-binding_C	1.7e-14	457-532
no_ID
Gene3D	G3DSA:2.30.38.10	no description	2.6e-27	364-439
Gene3D	G3DSA:3.30.300.30	no description	3.7e-30	445-542
Gene3D	G3DSA:3.40.50.980	no description	5e-46	42-196 197-352
HMMPanther	PTHR24096	FAMILY	5.4e-255	17-543
HMMPanther	PTHR24096:SF16	SUBFAMILY	5.4e-255	17-543
Seg	seg	seg	NA	96-113 163-191
superfamily	SSF56801	Acetyl-CoA	4.2e-163	32-545

Pseudomolecule

Chromosome	Start	End	Strand
7	1373744	1377647	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00045.1	maker	exon	1264979	1265744	.	+	.	ID=Zjn_sc00045.1.g02850.1.sm.mkhc:exon:1
Zjn_sc00045.1	maker	exon	1265945	1266298	.	+	.	ID=Zjn_sc00045.1.g02850.1.sm.mkhc:exon:2
Zjn_sc00045.1	maker	exon	1266420	1266618	.	+	.	ID=Zjn_sc00045.1.g02850.1.sm.mkhc:exon:3
Zjn_sc00045.1	maker	exon	1268005	1268218	.	+	.	ID=Zjn_sc00045.1.g02850.1.sm.mkhc:exon:4
Zjn_sc00045.1	maker	exon	1268330	1268432	.	+	.	ID=Zjn_sc00045.1.g02850.1.sm.mkhc:exon:5
Zjn_sc00045.1	maker	exon	1268568	1268882	.	+	.	ID=Zjn_sc00045.1.g02850.1.sm.mkhc:exon:6