Z. japonica Nagirizaki
Zjn_sc00045.1.g02370.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT5G20280.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
534 |
255 |
532 |
4e-73 |
195.3 |
24.7 |
35.6 |
| Subject |
1043 |
773 |
1041 |
|
| Annot |
| Symbols: ATSPS1F, SPS1F | sucrose phosphate synthase 1F | chr5:6844994-6849997 REVERSE LENGTH=1043 |
| NR |
gb|ADM63847.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
534 |
255 |
534 |
e-147 |
180.5 |
46.8 |
49.6 |
| Subject |
964 |
685 |
964 |
|
| Annot |
sucrose phosphate synthase [Saccharum hybrid cultivar ROC22] |
| IRGSP |
Os02t0184400-04_chr02_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
534 |
255 |
534 |
e-145 |
111.4 |
46.1 |
49.4 |
| Subject |
595 |
316 |
595 |
|
| Annot |
|
| Sbicolor |
Sobic.004G068400.1.p|Chr04|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
534 |
255 |
534 |
e-151 |
180.5 |
46.8 |
50.2 |
| Subject |
964 |
685 |
964 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00045.1.g02370.1.sm.mkhc |
length: 534 aa. |
| IPR006380 |
Sucrose-phosphate synthase |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF05116 |
S6PP |
4.9e-13 |
272-481 |
| no_ID |
|
| HMMPanther |
PTHR12526 |
GLYCOSYLTRANSFERASE |
6.6e-86 |
29-185 |
| HMMPanther |
PTHR12526:SF28 |
SUCROSE |
6.6e-86 |
29-185 |
| Seg |
seg |
seg |
NA |
90-98 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 7 | 1573955 | 1580334 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00045.1 |
maker |
exon |
1062292 |
1062883 |
. |
- |
. |
ID=Zjn_sc00045.1.g02370.1.sm.mkhc:exon:9 |
| Zjn_sc00045.1 |
maker |
exon |
1063262 |
1063389 |
. |
- |
. |
ID=Zjn_sc00045.1.g02370.1.sm.mkhc:exon:8 |
| Zjn_sc00045.1 |
maker |
exon |
1063519 |
1063955 |
. |
- |
. |
ID=Zjn_sc00045.1.g02370.1.sm.mkhc:exon:7 |
| Zjn_sc00045.1 |
maker |
exon |
1064765 |
1064867 |
. |
- |
. |
ID=Zjn_sc00045.1.g02370.1.sm.mkhc:exon:6 |
| Zjn_sc00045.1 |
maker |
exon |
1065237 |
1065344 |
. |
- |
. |
ID=Zjn_sc00045.1.g02370.1.sm.mkhc:exon:5 |
| Zjn_sc00045.1 |
maker |
exon |
1066700 |
1066763 |
. |
- |
. |
ID=Zjn_sc00045.1.g02370.1.sm.mkhc:exon:4 |
| Zjn_sc00045.1 |
maker |
exon |
1066961 |
1067169 |
. |
- |
. |
ID=Zjn_sc00045.1.g02370.1.sm.mkhc:exon:3 |
| Zjn_sc00045.1 |
maker |
exon |
1068213 |
1068302 |
. |
- |
. |
ID=Zjn_sc00045.1.g02370.1.sm.mkhc:exon:2 |
| Zjn_sc00045.1 |
maker |
exon |
1068415 |
1068671 |
. |
- |
. |
ID=Zjn_sc00045.1.g02370.1.sm.mkhc:exon:1 |