Z. japonica Nagirizaki
Zjn_sc00045.1.g01770.1.am.mkhc
Sequence
-
BLAST
| TAIR10 |
AT5G22740.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
316 |
4 |
315 |
e-126 |
169 |
68 |
81 |
| Subject |
534 |
218 |
534 |
|
| Annot |
| Symbols: ATCSLA02, CSLA02, ATCSLA2, CSLA2 | cellulose synthase-like A02 | chr5:7555379-7559866 REVERSE LENGTH=534 |
| NR |
ref|NP_001131007.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
316 |
4 |
316 |
e-149 |
162.7 |
82.3 |
90.5 |
| Subject |
514 |
198 |
514 |
|
| Annot |
uncharacterized protein LOC100192112 [Zea mays] gi|194690694|gb|ACF79431.1| unknown [Zea mays] gi|195641086|gb|ACG40011.1| CSLA1 - cellulose synthase-like family A; mannan synthase [Zea mays] gi|413926297|gb|AFW66229.1| CSLA1-cellulose synthase-like family isoform 1 [Zea mays] gi|413926298|gb|AFW66230.1| CSLA1-cellulose synthase-like family isoform 2 [Zea mays] |
| IRGSP |
Os02t0192500-01_chr02_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
316 |
2 |
316 |
e-145 |
164.9 |
81 |
89.9 |
| Subject |
521 |
203 |
521 |
|
| Annot |
|
| Sbicolor |
Sobic.004G075900.1.p|Chr04|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
316 |
4 |
316 |
e-152 |
164.9 |
82.6 |
90.2 |
| Subject |
521 |
205 |
521 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00045.1.g01770.1.am.mkhc |
length: 316 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR32044 |
FAMILY |
1.6e-178 |
14-316 |
| HMMPanther |
PTHR32044:SF0 |
SUBFAMILY |
1.6e-178 |
14-316 |
| HMMPfam |
PF13632 |
Glyco_trans_2_3 |
4.4e-17 |
21-182 |
| superfamily |
SSF53448 |
Nucleotide-diphospho-sugar |
8.4e-15 |
43-166 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 7 | 1837790 | 1839640 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00045.1 |
maker |
exon |
802986 |
803087 |
. |
+ |
. |
ID=Zjn_sc00045.1.g01770.1.am.mkhc:exon:1 |
| Zjn_sc00045.1 |
maker |
exon |
803368 |
803532 |
. |
+ |
. |
ID=Zjn_sc00045.1.g01770.1.am.mkhc:exon:2 |
| Zjn_sc00045.1 |
maker |
exon |
803704 |
803817 |
. |
+ |
. |
ID=Zjn_sc00045.1.g01770.1.am.mkhc:exon:3 |
| Zjn_sc00045.1 |
maker |
exon |
803946 |
804145 |
. |
+ |
. |
ID=Zjn_sc00045.1.g01770.1.am.mkhc:exon:4 |
| Zjn_sc00045.1 |
maker |
exon |
804228 |
804434 |
. |
+ |
. |
ID=Zjn_sc00045.1.g01770.1.am.mkhc:exon:5 |
| Zjn_sc00045.1 |
maker |
exon |
804517 |
804836 |
. |
+ |
. |
ID=Zjn_sc00045.1.g01770.1.am.mkhc:exon:6 |