Z. japonica Nagirizaki
Zjn_sc00045.1.g00680.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G38130.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 440 8 405 0.0 113.9 79.1 84.1
Subject 501 3 400
Annot | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19, ATHDA19 | histone deacetylase 1 | chr4:17896493-17899057 REVERSE LENGTH=501
NR ref|XP_012698204.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 440 1 432 0.0 117.5 89.3 92.7
Subject 517 1 427
Annot PREDICTED: LOW QUALITY PROTEIN: probable histone deacetylase 19 [Setaria italica]
IRGSP Os06t0583400-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 440 4 406 0.0 117.7 84.3 88.2
Subject 518 3 405
Annot
Sbicolor Sobic.004G091200.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 440 1 403 0.0 117.5 87.5 89.5
Subject 517 1 403
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00045.1.g00680.1.sm.mkhc length: 440 aa.
IPR000286 Histone deacetylase superfamily
method AccNumber shortName E-value location
FPrintScan PR01270 HDASUPER 1.1e-23 150-173
182-197
267-277
HMMPanther PTHR10625 HISTONE 1.2e-288 1-405
IPR003084 Histone deacetylase
Molecular Function GO:0004407 histone deacetylase activity    
Biological Process GO:0016575 histone deacetylation    
FPrintScan PR01271 HISDACETLASE 5.2e-58 44-61
77-95
108-125
129-149
169-185
228-241
245-263
HMMPIR PIRSF037913 Histone 0 21-434
IPR023801 Histone deacetylase domain
Gene3D G3DSA:3.40.800.20 no description 1.2e-128 20-396
HMMPfam PF00850 Hist_deacetyl 5.2e-80 39-331
no_ID  
HMMPanther PTHR10625:SF28 HISTONE 1.2e-288 1-405
superfamily SSF52768 Arginase/deacetylase 2.3e-133 23-387
Pseudomolecule
Chromosome Start End Strand
723214632326264+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00045.1 maker exon 316362 317099 . - . ID=Zjn_sc00045.1.g00680.1.sm.mkhc:exon:4
Zjn_sc00045.1 maker exon 319026 319256 . - . ID=Zjn_sc00045.1.g00680.1.sm.mkhc:exon:3
Zjn_sc00045.1 maker exon 319918 320358 . - . ID=Zjn_sc00045.1.g00680.1.sm.mkhc:exon:2
Zjn_sc00045.1 maker exon 320621 321163 . - . ID=Zjn_sc00045.1.g00680.1.sm.mkhc:exon:1

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