Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00044.1.g04310.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00044.1)

BLAST

TAIR10	AT5G57655.2		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	351	71	351	2e-88	135.9	50.1	59
		Subject	477	167	477
		Annot	\| Symbols: \| xylose isomerase family protein \| chr5:23347030-23349805 FORWARD LENGTH=477
NR	ref\|XP_006658089.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	351	95	351	e-105	136.8	57.8	61
		Subject	480	207	480
		Annot	PREDICTED: xylose isomerase-like [Oryza brachyantha]
IRGSP	Os07t0669100-02_chr07_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	351	95	351	e-108	90.3	57.8	60.7
		Subject	317	44	317
		Annot
Sbicolor	Sobic.002G409800.1.p\|Chr02\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	351	56	351	e-106	138.2	59.5	65
		Subject	485	179	485
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR001998	Xylose isomerase
Zjn_sc00044.1.g04310.1.sm.mkhc				length: 351 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0005975	carbohydrate metabolic process
Molecular Function	GO:0009045	xylose isomerase activity
ProfileScan	PS51415	XYLOSE_ISOMERASE	59.727	142-351
IPR013022	Xylose isomerase-like, TIM barrel domain
Gene3D	G3DSA:3.20.20.150	no description	5.1e-29	45-150 151-243 244-351
HMMPfam	PF01261	AP_endonuc_2	7.2e-09	98-227
superfamily	SSF51658	Xylose	2.5e-23	150-351 45-149
no_ID
Coil	coil	coiled-coil	NA	131-152
HMMPanther	PTHR32176	FAMILY	1.9e-140	37-349
HMMPanther	PTHR32176:SF0	SUBFAMILY	1.9e-140	37-349
Seg	seg	seg	NA	7-24

Pseudomolecule

Chromosome	Start	End	Strand
3	7680889	7686471	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00044.1	maker	exon	1710423	1710786	.	-	.	ID=Zjn_sc00044.1.g04310.1.sm.mkhc:exon:17
Zjn_sc00044.1	maker	exon	1711366	1711609	.	-	.	ID=Zjn_sc00044.1.g04310.1.sm.mkhc:exon:16
Zjn_sc00044.1	maker	exon	1711706	1711783	.	-	.	ID=Zjn_sc00044.1.g04310.1.sm.mkhc:exon:15
Zjn_sc00044.1	maker	exon	1711865	1711936	.	-	.	ID=Zjn_sc00044.1.g04310.1.sm.mkhc:exon:14
Zjn_sc00044.1	maker	exon	1712018	1712117	.	-	.	ID=Zjn_sc00044.1.g04310.1.sm.mkhc:exon:13
Zjn_sc00044.1	maker	exon	1712218	1712258	.	-	.	ID=Zjn_sc00044.1.g04310.1.sm.mkhc:exon:12
Zjn_sc00044.1	maker	exon	1712869	1712944	.	-	.	ID=Zjn_sc00044.1.g04310.1.sm.mkhc:exon:11
Zjn_sc00044.1	maker	exon	1713034	1713085	.	-	.	ID=Zjn_sc00044.1.g04310.1.sm.mkhc:exon:10
Zjn_sc00044.1	maker	exon	1713225	1713280	.	-	.	ID=Zjn_sc00044.1.g04310.1.sm.mkhc:exon:9
Zjn_sc00044.1	maker	exon	1713355	1713400	.	-	.	ID=Zjn_sc00044.1.g04310.1.sm.mkhc:exon:8
Zjn_sc00044.1	maker	exon	1713523	1713574	.	-	.	ID=Zjn_sc00044.1.g04310.1.sm.mkhc:exon:7
Zjn_sc00044.1	maker	exon	1714175	1714225	.	-	.	ID=Zjn_sc00044.1.g04310.1.sm.mkhc:exon:6
Zjn_sc00044.1	maker	exon	1714428	1714580	.	-	.	ID=Zjn_sc00044.1.g04310.1.sm.mkhc:exon:5
Zjn_sc00044.1	maker	exon	1714863	1714937	.	-	.	ID=Zjn_sc00044.1.g04310.1.sm.mkhc:exon:4
Zjn_sc00044.1	maker	exon	1715039	1715143	.	-	.	ID=Zjn_sc00044.1.g04310.1.sm.mkhc:exon:3
Zjn_sc00044.1	maker	exon	1715239	1715331	.	-	.	ID=Zjn_sc00044.1.g04310.1.sm.mkhc:exon:2
Zjn_sc00044.1	maker	exon	1715621	1716005	.	-	.	ID=Zjn_sc00044.1.g04310.1.sm.mkhc:exon:1