Z. japonica Nagirizaki
Zjn_sc00044.1.g03940.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G04140.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1356 342 1352 0.0 119.6 63.2 68.6
Subject 1622 610 1620
Annot | Symbols: GLU1, GLS1, GLUS, FD-GOGAT | glutamate synthase 1 | chr5:1130031-1138186 FORWARD LENGTH=1622
NR ref|XP_004958567.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1356 342 1355 0.0 119.1 71.7 73.1
Subject 1615 601 1614
Annot PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic [Setaria italica]
IRGSP Os07t0658400-02_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1356 342 1356 0.0 76.7 70.6 72.8
Subject 1040 26 1040
Annot
Sbicolor Sobic.002G402700.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1356 342 1356 0.0 119.5 71.2 72.9
Subject 1620 603 1620
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00044.1.g03940.1.sm.mkhc length: 1356 aa.
IPR000583 Class II glutamine amidotransferase domain
method AccNumber shortName E-value location
Biological Process GO:0008152 metabolic process    
HMMPfam PF00310 GATase_2 5.1e-39 76-177
177-311
IPR002489 Glutamate synthase, alpha subunit, C-terminal
Biological Process GO:0008152 metabolic process    
Molecular Function GO:0016491 oxidoreductase activity    
Biological Process GO:0055114 oxidation-reduction process    
Gene3D G3DSA:2.160.20.60 no description 2.5e-92 1088-1342
HMMPfam PF01493 GXGXG 4.6e-65 1103-1295
superfamily SSF69336 Alpha 1.5e-91 1070-1341
IPR002932 Glutamate synthase, central-C
Biological Process GO:0006537 glutamate biosynthetic process    
Molecular Function GO:0015930 glutamate synthase activity    
Molecular Function GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF01645 Glu_synthase 2.9e-161 638-1022
IPR006982 Glutamate synthase, central-N
Biological Process GO:0006807 nitrogen compound metabolic process    
Molecular Function GO:0015930 glutamate synthase activity    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF04898 Glu_syn_central 3.4e-84 342-580
IPR013785 Aldolase-type TIM barrel
Molecular Function GO:0003824 catalytic activity    
Gene3D G3DSA:3.20.20.70 no description 1.7e-163 344-627
670-1041
IPR017932 Glutamine amidotransferase type 2 domain
ProfileScan PS51278 GATASE_TYPE_2 12.565 76-339
no_ID  
Gene3D G3DSA:3.60.20.10 no description 3.7e-57 76-177
178-343
HMMPanther PTHR11938 FAD 0 60-1346
HMMPanther PTHR11938:SF44 OXIDOREDUCTASE, 0 60-1346
Seg seg seg NA 2-34
385-406
superfamily SSF51395 FMN-linked 1.3e-227 342-1070
superfamily SSF56235 N-terminal 5.8e-98 76-343
Pseudomolecule
Chromosome Start End Strand
375122397526974-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00044.1 maker exon 1541773 1542769 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:32
Zjn_sc00044.1 maker exon 1542848 1542931 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:31
Zjn_sc00044.1 maker exon 1543172 1543250 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:30
Zjn_sc00044.1 maker exon 1543412 1543650 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:29
Zjn_sc00044.1 maker exon 1543715 1543808 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:28
Zjn_sc00044.1 maker exon 1543897 1544039 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:27
Zjn_sc00044.1 maker exon 1544304 1544402 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:26
Zjn_sc00044.1 maker exon 1544487 1544615 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:25
Zjn_sc00044.1 maker exon 1544758 1544832 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:24
Zjn_sc00044.1 maker exon 1544901 1545098 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:23
Zjn_sc00044.1 maker exon 1545180 1545275 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:22
Zjn_sc00044.1 maker exon 1545634 1545732 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:21
Zjn_sc00044.1 maker exon 1545913 1546152 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:20
Zjn_sc00044.1 maker exon 1546635 1546745 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:19
Zjn_sc00044.1 maker exon 1546852 1547049 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:18
Zjn_sc00044.1 maker exon 1547127 1547242 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:17
Zjn_sc00044.1 maker exon 1547570 1547666 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:16
Zjn_sc00044.1 maker exon 1547903 1548008 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:15
Zjn_sc00044.1 maker exon 1548108 1548166 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:14
Zjn_sc00044.1 maker exon 1548374 1548503 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:13
Zjn_sc00044.1 maker exon 1548941 1549098 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:12
Zjn_sc00044.1 maker exon 1549591 1549806 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:11
Zjn_sc00044.1 maker exon 1549895 1550005 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:10
Zjn_sc00044.1 maker exon 1551267 1551359 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:9
Zjn_sc00044.1 maker exon 1552287 1552383 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:8
Zjn_sc00044.1 maker exon 1552904 1552974 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:7
Zjn_sc00044.1 maker exon 1553064 1553162 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:6
Zjn_sc00044.1 maker exon 1553592 1553723 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:5
Zjn_sc00044.1 maker exon 1554273 1554307 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:4
Zjn_sc00044.1 maker exon 1554785 1555097 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:3
Zjn_sc00044.1 maker exon 1555829 1555955 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:2
Zjn_sc00044.1 maker exon 1556450 1556508 . - . ID=Zjn_sc00044.1.g03940.1.sm.mkhc:exon:1

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