Z. japonica Nagirizaki
Zjn_sc00044.1.g03930.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G19390.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 385 166 381 3e-42 226 33.2 39.2
Subject 870 621 869
Annot | Symbols: | Rho GTPase activation protein (RhoGAP) with PH domain | chr5:6531906-6538206 FORWARD LENGTH=870
NR ref|XP_004958565.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 385 166 385 9e-86 225.5 44.7 47.5
Subject 868 628 868
Annot PREDICTED: rho GTPase-activating protein 7-like isoform X1 [Setaria italica]
IRGSP Os07t0658300-03_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 385 166 385 2e-87 125.7 43.9 47.5
Subject 484 245 484
Annot
Sbicolor Sobic.002G402600.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 385 166 385 2e-85 222.3 42.9 46.8
Subject 856 616 856
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00044.1.g03930.1.am.mkhc length: 385 aa.
IPR000198 Rho GTPase-activating protein domain
method AccNumber shortName E-value location
Biological Process GO:0007165 signal transduction    
Gene3D G3DSA:1.10.555.10 no description 1.5e-09 33-115
HMMPfam PF00620 RhoGAP 3.3e-07 56-115
IPR008936 Rho GTPase activation protein
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007165 signal transduction    
superfamily SSF48350 GTPase 1.9e-10 42-114
no_ID  
Coil coil coiled-coil NA 156-193
199-220
340-361
Seg seg seg NA 8-19
179-200
209-220
Pseudomolecule
Chromosome Start End Strand
375044187512238+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00044.1 maker exon 1533952 1534007 . + . ID=Zjn_sc00044.1.g03930.1.am.mkhc:exon:1
Zjn_sc00044.1 maker exon 1535305 1535336 . + . ID=Zjn_sc00044.1.g03930.1.am.mkhc:exon:2
Zjn_sc00044.1 maker exon 1535732 1535851 . + . ID=Zjn_sc00044.1.g03930.1.am.mkhc:exon:3
Zjn_sc00044.1 maker exon 1535941 1536018 . + . ID=Zjn_sc00044.1.g03930.1.am.mkhc:exon:4
Zjn_sc00044.1 maker exon 1536107 1536162 . + . ID=Zjn_sc00044.1.g03930.1.am.mkhc:exon:5
Zjn_sc00044.1 maker exon 1538659 1538811 . + . ID=Zjn_sc00044.1.g03930.1.am.mkhc:exon:6
Zjn_sc00044.1 maker exon 1540257 1540313 . + . ID=Zjn_sc00044.1.g03930.1.am.mkhc:exon:7
Zjn_sc00044.1 maker exon 1540461 1540627 . + . ID=Zjn_sc00044.1.g03930.1.am.mkhc:exon:8
Zjn_sc00044.1 maker exon 1540890 1540959 . + . ID=Zjn_sc00044.1.g03930.1.am.mkhc:exon:9
Zjn_sc00044.1 maker exon 1541139 1541321 . + . ID=Zjn_sc00044.1.g03930.1.am.mkhc:exon:10
Zjn_sc00044.1 maker exon 1541406 1541772 . + . ID=Zjn_sc00044.1.g03930.1.am.mkhc:exon:11

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