Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00044.1.g02270.1.am.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00044.1)

BLAST

TAIR10	AT4G39770.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	823	403	599	8e-74	42.4	15.9	19.4
		Subject	349	137	342
		Annot	\| Symbols: TPPH \| Haloacid dehalogenase-like hydrolase (HAD) superfamily protein \| chr4:18449138-18451218 REVERSE LENGTH=349
NR	ref\|XP_004958373.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	823	403	598	6e-83	45.2	20	21.7
		Subject	372	149	353
		Annot	PREDICTED: probable trehalose-phosphate phosphatase 3 [Setaria italica]
IRGSP	Os07t0624600-01_chr07_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	823	389	607	5e-73	44.5	16.9	20.7
		Subject	366	126	363
		Annot
Sbicolor	Sobic.002G381600.1.p\|Chr02\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	823	403	598	2e-84	44.2	18.3	20.7
		Subject	364	149	349
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR003337	Trehalose-phosphatase
Zjn_sc00044.1.g02270.1.am.mk				length: 823 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003824	catalytic activity
Biological Process	GO:0005992	trehalose biosynthetic process
HMMPfam	PF02358	Trehalose_PPase	8.3e-46	261-316 407-585
HMMTigr	TIGR00685	T6PP:	4e-31	410-598
IPR023214	HAD-like domain
Gene3D	G3DSA:3.40.50.1000	no description	1.7e-26	258-307 517-601
superfamily	SSF56784	HAD-like	2.1e-11	404-604 258-306
no_ID
HMMPanther	PTHR10788	TREHALOSE-6-PHOSPHATE	2.8e-102	185-646
Seg	seg	seg	NA	46-79 124-139 151-165 248-253 323-330 765-790

Pseudomolecule

Chromosome	Start	End	Strand
3	6919218	6925327	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00044.1	maker_non_over	exon	948752	949127	.	-	.	ID=Zjn_sc00044.1.g02270.1.am.mk:exon:15
Zjn_sc00044.1	maker_non_over	exon	949614	949880	.	-	.	ID=Zjn_sc00044.1.g02270.1.am.mk:exon:14
Zjn_sc00044.1	maker_non_over	exon	950180	950244	.	-	.	ID=Zjn_sc00044.1.g02270.1.am.mk:exon:13
Zjn_sc00044.1	maker_non_over	exon	950473	950544	.	-	.	ID=Zjn_sc00044.1.g02270.1.am.mk:exon:12
Zjn_sc00044.1	maker_non_over	exon	950717	950787	.	-	.	ID=Zjn_sc00044.1.g02270.1.am.mk:exon:11
Zjn_sc00044.1	maker_non_over	exon	950907	950976	.	-	.	ID=Zjn_sc00044.1.g02270.1.am.mk:exon:10
Zjn_sc00044.1	maker_non_over	exon	951357	951434	.	-	.	ID=Zjn_sc00044.1.g02270.1.am.mk:exon:9
Zjn_sc00044.1	maker_non_over	exon	951529	951630	.	-	.	ID=Zjn_sc00044.1.g02270.1.am.mk:exon:8
Zjn_sc00044.1	maker_non_over	exon	951777	951830	.	-	.	ID=Zjn_sc00044.1.g02270.1.am.mk:exon:7
Zjn_sc00044.1	maker_non_over	exon	951901	951999	.	-	.	ID=Zjn_sc00044.1.g02270.1.am.mk:exon:6
Zjn_sc00044.1	maker_non_over	exon	952171	952467	.	-	.	ID=Zjn_sc00044.1.g02270.1.am.mk:exon:5
Zjn_sc00044.1	maker_non_over	exon	952625	952696	.	-	.	ID=Zjn_sc00044.1.g02270.1.am.mk:exon:4
Zjn_sc00044.1	maker_non_over	exon	952831	952997	.	-	.	ID=Zjn_sc00044.1.g02270.1.am.mk:exon:3
Zjn_sc00044.1	maker_non_over	exon	953071	953444	.	-	.	ID=Zjn_sc00044.1.g02270.1.am.mk:exon:2
Zjn_sc00044.1	maker_non_over	exon	954554	954861	.	-	.	ID=Zjn_sc00044.1.g02270.1.am.mk:exon:1