Z. japonica Nagirizaki
Zjn_sc00044.1.g02020.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G65420.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 328 50 296 3e-53 93.9 36 50.3
Subject 308 42 301
Annot | Symbols: CYCD4;1 | CYCLIN D4;1 | chr5:26141592-26143750 REVERSE LENGTH=308
NR ref|XP_004958346.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 328 1 328 e-128 106.1 75.9 85.1
Subject 348 1 348
Annot PREDICTED: cyclin-D2-2-like [Setaria italica]
IRGSP Os07t0620800-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 328 1 328 e-110 108.5 65.9 78.7
Subject 356 1 356
Annot
Sbicolor Sobic.002G378600.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 328 1 328 e-118 105.2 70.7 80.8
Subject 345 1 345
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00044.1.g02020.1.sm.mk length: 328 aa.
IPR004367 Cyclin, C-terminal domain
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
HMMPfam PF02984 Cyclin_C 9e-05 188-248
IPR006671 Cyclin, N-terminal
HMMPfam PF00134 Cyclin_N 3.3e-30 55-185
PatternScan PS00292 CYCLINS NA 85-116
IPR013763 Cyclin-like
Gene3D G3DSA:1.10.472.10 no description 3e-06 76-179
180-245
HMMSmart SM00385 domain 4e-15 90-179
superfamily SSF47954 Cyclin-like 4.9e-35 40-193
no_ID  
HMMPanther PTHR10177 CYCLINE 7.4e-89 49-322
HMMPanther PTHR10177:SF76 CYCLIN-D 7.4e-89 49-322
Seg seg seg NA 20-36
299-311
Pseudomolecule
Chromosome Start End Strand
367935916795250+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00044.1 maker_non_over exon 823125 823406 . + . ID=Zjn_sc00044.1.g02020.1.sm.mk:exon:1
Zjn_sc00044.1 maker_non_over exon 823662 823748 . + . ID=Zjn_sc00044.1.g02020.1.sm.mk:exon:2
Zjn_sc00044.1 maker_non_over exon 823848 823946 . + . ID=Zjn_sc00044.1.g02020.1.sm.mk:exon:3
Zjn_sc00044.1 maker_non_over exon 824033 824237 . + . ID=Zjn_sc00044.1.g02020.1.sm.mk:exon:4
Zjn_sc00044.1 maker_non_over exon 824325 824398 . + . ID=Zjn_sc00044.1.g02020.1.sm.mk:exon:5
Zjn_sc00044.1 maker_non_over exon 824545 824784 . + . ID=Zjn_sc00044.1.g02020.1.sm.mk:exon:6

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