Z. japonica Nagirizaki
Zjn_sc00044.1.g01350.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G14540.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 375 1 118 4e-53 42.9 25.3 28.5
Subject 161 1 118
Annot | Symbols: NF-YB3 | nuclear factor Y, subunit B3 | chr4:8344663-8345148 FORWARD LENGTH=161
NR ref|XP_004958263.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 375 1 190 5e-69 57.9 39.5 44
Subject 217 1 194
Annot PREDICTED: nuclear transcription factor Y subunit B-3-like [Setaria italica]
IRGSP Os07t0606600-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 375 1 179 6e-59 59.7 34.7 38.9
Subject 224 1 183
Annot
Sbicolor Sobic.002G369800.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 375 1 187 9e-72 58.1 39.7 42.9
Subject 218 1 192
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00044.1.g01350.1.am.mk length: 375 aa.
IPR003956 Transcription factor, NFYB/HAP3, conserved site
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
PatternScan PS00685 NFYB_HAP3 NA 56-72
IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase
Molecular Function GO:0003677 DNA binding    
FPrintScan PR00615 CCAATSUBUNTA 4.2e-18 53-71
72-90
91-109
HMMPanther PTHR11064:SF9 CCAAT-BINDING 3.8e-90 1-197
IPR003958 Transcription factor CBF/NF-Y/archaeal histone
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0043565 sequence-specific DNA binding    
HMMPfam PF00808 CBFD_NFYB_HMF 1.1e-26 25-89
IPR009072 Histone-fold
Molecular Function GO:0046982 protein heterodimerization activity    
Gene3D G3DSA:1.10.20.10 no description 1e-48 17-126
superfamily SSF47113 Histone-fold 9.7e-35 22-115
no_ID  
HMMPanther PTHR11064 CCAAT-BINDING 3.8e-90 1-197
Seg seg seg NA 122-130
145-166
Pseudomolecule
Chromosome Start End Strand
365159736518927-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00044.1 maker_non_over exon 545507 545586 . - . ID=Zjn_sc00044.1.g01350.1.am.mk:exon:6
Zjn_sc00044.1 maker_non_over exon 545672 545963 . - . ID=Zjn_sc00044.1.g01350.1.am.mk:exon:5
Zjn_sc00044.1 maker_non_over exon 546034 546165 . - . ID=Zjn_sc00044.1.g01350.1.am.mk:exon:4
Zjn_sc00044.1 maker_non_over exon 547162 547833 . - . ID=Zjn_sc00044.1.g01350.1.am.mk:exon:3
Zjn_sc00044.1 maker_non_over exon 547894 548128 . - . ID=Zjn_sc00044.1.g01350.1.am.mk:exon:2
Zjn_sc00044.1 maker_non_over exon 548412 548461 . - . ID=Zjn_sc00044.1.g01350.1.am.mk:exon:1

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