Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00044.1.g00860.1.am.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00044.1)

BLAST

TAIR10	AT5G07740.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	262	4	217	1e-86	629.4	61.8	71.8
		Subject	1649	1236	1491
		Annot	\| Symbols: \| actin binding \| chr5:2459076-2466580 REVERSE LENGTH=1649
NR	ref\|XP_008653319.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	262	1	217	e-103	633.6	76	79.4
		Subject	1660	1218	1477
		Annot	PREDICTED: formin-like protein 5 [Zea mays]
IRGSP	Os07t0596300-01_chr07_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	262	2	217	e-104	282.8	77.1	79.4
		Subject	741	299	558
		Annot
Sbicolor	Sobic.002G362800.1.p\|Chr02\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	262	1	217	e-106	616	76	79.4
		Subject	1614	1172	1431
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR015425	Formin, FH2 domain
Zjn_sc00044.1.g00860.1.am.mkhc				length: 262 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF02181	FH2	5.6e-22	9-155 154-215
HMMSmart	SM00498	Formin	0.00062	5-260
ProfileScan	PS51444	FH2	17.985	5-262
superfamily	SSF101447	Formin	8.8e-53	17-253
IPR027643	Formin-like family, viridiplantae
Cellular Component	GO:0005884	actin filament
Biological Process	GO:0045010	actin nucleation
HMMPanther	PTHR23213:SF18	FORMIN-RELATED	1.3e-106	1-260
no_ID
HMMPanther	PTHR23213	FORMIN-RELATED	1.3e-106	1-260
Seg	seg	seg	NA	62-79 161-173

Pseudomolecule

Chromosome	Start	End	Strand
3	6320599	6327121	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00044.1	maker	exon	350133	350362	.	-	.	ID=Zjn_sc00044.1.g00860.1.am.mkhc:exon:11
Zjn_sc00044.1	maker	exon	350440	350682	.	-	.	ID=Zjn_sc00044.1.g00860.1.am.mkhc:exon:10
Zjn_sc00044.1	maker	exon	350764	351076	.	-	.	ID=Zjn_sc00044.1.g00860.1.am.mkhc:exon:9
Zjn_sc00044.1	maker	exon	351158	351226	.	-	.	ID=Zjn_sc00044.1.g00860.1.am.mkhc:exon:8
Zjn_sc00044.1	maker	exon	352213	352307	.	-	.	ID=Zjn_sc00044.1.g00860.1.am.mkhc:exon:7
Zjn_sc00044.1	maker	exon	353849	353930	.	-	.	ID=Zjn_sc00044.1.g00860.1.am.mkhc:exon:6
Zjn_sc00044.1	maker	exon	355113	355154	.	-	.	ID=Zjn_sc00044.1.g00860.1.am.mkhc:exon:5
Zjn_sc00044.1	maker	exon	355238	355336	.	-	.	ID=Zjn_sc00044.1.g00860.1.am.mkhc:exon:4
Zjn_sc00044.1	maker	exon	355409	355480	.	-	.	ID=Zjn_sc00044.1.g00860.1.am.mkhc:exon:3
Zjn_sc00044.1	maker	exon	356006	356132	.	-	.	ID=Zjn_sc00044.1.g00860.1.am.mkhc:exon:2
Zjn_sc00044.1	maker	exon	356344	356655	.	-	.	ID=Zjn_sc00044.1.g00860.1.am.mkhc:exon:1