Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00044.1.g00670.1.sm.mkhc ( /TE )

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00044.1)

BLAST

TAIR10	AT5G43100.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	240	57	151	2e-39	262.9	29.6	35.8
		Subject	631	193	287
		Annot	\| Symbols: \| Eukaryotic aspartyl protease family protein \| chr5:17299264-17302718 FORWARD LENGTH=631
NR	ref\|XP_003562781.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	240	57	151	6e-45	262.1	37.1	37.9
		Subject	629	202	296
		Annot	PREDICTED: aspartic proteinase-like protein 2 [Brachypodium distachyon]
IRGSP	Os07t0592200-02_chr07_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	240	57	151	2e-46	262.9	35.4	37.9
		Subject	631	208	302
		Annot
Sbicolor	Sobic.002G361300.1.p\|Chr02\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	240	57	151	2e-44	263.3	34.6	37.5
		Subject	632	206	300
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR001461	Peptidase A1
Zjn_sc00044.1.g00670.1.sm.mkhc				length: 240 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0004190	aspartic-type endopeptidase activity
Biological Process	GO:0006508	proteolysis
HMMPanther	PTHR13683	ASPARTYL	5e-21	57-152
HMMPfam	PF00026	Asp	2e-06	19-56
IPR001969	Peptidase aspartic, active site
Molecular Function	GO:0004190	aspartic-type endopeptidase activity
Biological Process	GO:0006508	proteolysis
PatternScan	PS00141	ASP_PROTEASE	NA	34-45
IPR021109	Aspartic peptidase
Gene3D	G3DSA:2.40.70.10	no description	2.1e-10	18-57 58-142
superfamily	SSF50630	Acid	3e-27	9-145
no_ID
HMMPanther	PTHR13683:SF98	CHLOROPLAST	5e-21	57-152

Pseudomolecule

Chromosome	Start	End	Strand
3	6257916	6264959	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00044.1	maker	exon	287450	287923	.	-	.	ID=Zjn_sc00044.1.g00670.1.sm.mkhc:exon:6
Zjn_sc00044.1	maker	exon	288780	288901	.	-	.	ID=Zjn_sc00044.1.g00670.1.sm.mkhc:exon:5
Zjn_sc00044.1	maker	exon	291455	291476	.	-	.	ID=Zjn_sc00044.1.g00670.1.sm.mkhc:exon:4
Zjn_sc00044.1	maker	exon	292263	292353	.	-	.	ID=Zjn_sc00044.1.g00670.1.sm.mkhc:exon:3
Zjn_sc00044.1	maker	exon	292443	292633	.	-	.	ID=Zjn_sc00044.1.g00670.1.sm.mkhc:exon:2
Zjn_sc00044.1	maker	exon	294323	294493	.	-	.	ID=Zjn_sc00044.1.g00670.1.sm.mkhc:exon:1