Z. japonica Nagirizaki
Zjn_sc00043.1.g05060.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G44160.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 372 28 372 1e-91 125.3 57.5 66.7
Subject 466 34 466
Annot | Symbols: NUC | C2H2-like zinc finger protein | chr5:17773091-17775513 FORWARD LENGTH=466
NR ref|NP_001042553.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 372 5 372 e-121 111.6 69.6 76.3
Subject 415 10 415
Annot Os01g0242200 [Oryza sativa Japonica Group] gi|56784577|dbj|BAD81624.1| putative zinc finger protein ID1 [Oryza sativa Japonica Group] gi|113532084|dbj|BAF04467.1| Os01g0242200 [Oryza sativa Japonica Group]
IRGSP Os01t0242200-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 372 5 372 e-124 111.6 69.6 76.3
Subject 415 10 415
Annot
Sbicolor Sobic.003G001300.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 372 4 372 e-120 129.3 72.6 79.3
Subject 481 16 481
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00043.1.g05060.1.am.mk length: 372 aa.
IPR007087 Zinc finger, C2H2
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
HMMPfam PF00096 zf-C2H2 0.001 58-80
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 60-80
ProfileScan PS50157 ZINC_FINGER_C2H2_2 11.614 58-80
IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function GO:0003676 nucleic acid binding    
Gene3D G3DSA:3.30.160.60 no description 0.0006 58-80
122-155
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 1.1e+02 58-80
99-129
134-154
no_ID  
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 1.2e-118 28-192
HMMPanther PTHR10593:SF17 SUBFAMILY 1.2e-118 28-192
Seg seg seg NA 15-30
223-232
superfamily SSF57667 C2H2 0.00012 129-172
40-81
Pseudomolecule
Chromosome Start End Strand
56094162205-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00043.1 maker_non_over exon 2307858 2307986 . + . ID=Zjn_sc00043.1.g05060.1.am.mk:exon:1
Zjn_sc00043.1 maker_non_over exon 2308133 2309122 . + . ID=Zjn_sc00043.1.g05060.1.am.mk:exon:2

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