Z. japonica Nagirizaki
Zjn_sc00043.1.g04080.1.am.mk
Sequence
-
BLAST
| TAIR10 |
AT1G65480.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
302 |
132 |
302 |
5e-71 |
57.9 |
39.4 |
47.7 |
| Subject |
175 |
7 |
175 |
|
| Annot |
| Symbols: FT | PEBP (phosphatidylethanolamine-binding protein) family protein | chr1:24331510-24333689 FORWARD LENGTH=175 |
| NR |
ref|XP_002457125.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
302 |
128 |
302 |
1e-86 |
103.6 |
51 |
54.3 |
| Subject |
313 |
141 |
313 |
|
| Annot |
hypothetical protein SORBIDRAFT_03g001700 [Sorghum bicolor] gi|241929100|gb|EES02245.1| hypothetical protein SORBIDRAFT_03g001700 [Sorghum bicolor] |
| IRGSP |
Os01t0218500-02_chr01_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
302 |
130 |
302 |
1e-85 |
91.4 |
49.7 |
53 |
| Subject |
276 |
106 |
276 |
|
| Annot |
|
| Sbicolor |
Sobic.003G017200.1.p|Chr03|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
302 |
128 |
302 |
2e-88 |
57.3 |
51 |
54.3 |
| Subject |
173 |
1 |
173 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00043.1.g04080.1.am.mk |
length: 302 aa. |
| IPR001858 |
Phosphatidylethanolamine-binding, conserved site |
| method |
AccNumber |
shortName |
E-value |
location |
| PatternScan |
PS01220 |
PBP |
NA |
190-212 |
| IPR008914 |
Phosphatidylethanolamine-binding protein PEBP |
| Gene3D |
G3DSA:3.90.280.10 |
no description |
1.2e-59 |
128-298 |
| HMMPfam |
PF01161 |
PBP |
2e-19 |
152-289 |
| superfamily |
SSF49777 |
PEBP-like |
1.6e-52 |
137-295 |
| no_ID |
|
| HMMPanther |
PTHR11362 |
PHOSPHATIDYLETHANOLAMINE-BINDING |
1.6e-70 |
124-301 |
| Seg |
seg |
seg |
NA |
109-120 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 5 | 429754 | 432846 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00043.1 |
maker_non_over |
exon |
1937217 |
1937446 |
. |
- |
. |
ID=Zjn_sc00043.1.g04080.1.am.mk:exon:6 |
| Zjn_sc00043.1 |
maker_non_over |
exon |
1937553 |
1937593 |
. |
- |
. |
ID=Zjn_sc00043.1.g04080.1.am.mk:exon:5 |
| Zjn_sc00043.1 |
maker_non_over |
exon |
1939098 |
1939159 |
. |
- |
. |
ID=Zjn_sc00043.1.g04080.1.am.mk:exon:4 |
| Zjn_sc00043.1 |
maker_non_over |
exon |
1939241 |
1939450 |
. |
- |
. |
ID=Zjn_sc00043.1.g04080.1.am.mk:exon:3 |
| Zjn_sc00043.1 |
maker_non_over |
exon |
1939586 |
1939679 |
. |
- |
. |
ID=Zjn_sc00043.1.g04080.1.am.mk:exon:2 |
| Zjn_sc00043.1 |
maker_non_over |
exon |
1940038 |
1940309 |
. |
- |
. |
ID=Zjn_sc00043.1.g04080.1.am.mk:exon:1 |