Z. japonica Nagirizaki
Zjn_sc00043.1.g03200.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G57230.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 246 1 212 6e-52 97.6 41.9 59.8
Subject 240 1 185
Annot | Symbols: AGL16 | AGAMOUS-like 16 | chr3:21177710-21180671 FORWARD LENGTH=240
NR ref|XP_004967658.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 246 1 232 4e-78 93.1 66.3 75.2
Subject 229 1 204
Annot PREDICTED: MADS-box transcription factor 25-like [Setaria italica]
IRGSP Os04t0304400-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 246 1 237 8e-78 92.3 61.8 72.4
Subject 227 1 208
Annot
Sbicolor Sobic.006G107700.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 246 1 209 4e-55 83.7 45.1 59.3
Subject 206 1 182
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00043.1.g03200.1.am.mkhc length: 246 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 3.9e-27 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 5.8e-24 9-59
HMMSmart SM00432 no description 2.3e-36 1-60
ProfileScan PS50066 MADS_BOX_2 30.796 1-61
superfamily SSF55455 SRF-like 1.9e-31 2-94
IPR002487 Transcription factor, K-box
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF01486 K-box 2.7e-21 114-196
ProfileScan PS51297 K_BOX 13.629 113-203
no_ID  
Coil coil coiled-coil NA 113-141
150-171
176-197
HMMPanther PTHR11945 MADS 5.7e-68 1-196
HMMPanther PTHR11945:SF19 MADS 5.7e-68 1-196
Seg seg seg NA 123-138
216-230
Pseudomolecule
Chromosome Start End Strand
5822830826801-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00043.1 maker exon 1543262 1543875 . + . ID=Zjn_sc00043.1.g03200.1.am.mkhc:exon:1
Zjn_sc00043.1 maker exon 1544256 1544337 . + . ID=Zjn_sc00043.1.g03200.1.am.mkhc:exon:2
Zjn_sc00043.1 maker exon 1544957 1545034 . + . ID=Zjn_sc00043.1.g03200.1.am.mkhc:exon:3
Zjn_sc00043.1 maker exon 1545278 1545339 . + . ID=Zjn_sc00043.1.g03200.1.am.mkhc:exon:4
Zjn_sc00043.1 maker exon 1545493 1545592 . + . ID=Zjn_sc00043.1.g03200.1.am.mkhc:exon:5
Zjn_sc00043.1 maker exon 1545673 1545714 . + . ID=Zjn_sc00043.1.g03200.1.am.mkhc:exon:6
Zjn_sc00043.1 maker exon 1545819 1545902 . + . ID=Zjn_sc00043.1.g03200.1.am.mkhc:exon:7
Zjn_sc00043.1 maker exon 1546140 1546209 . + . ID=Zjn_sc00043.1.g03200.1.am.mkhc:exon:8
Zjn_sc00043.1 maker exon 1546419 1547233 . + . ID=Zjn_sc00043.1.g03200.1.am.mkhc:exon:9

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