Z. japonica Nagirizaki
Zjn_sc00043.1.g02860.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G03290.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 301 27 301 e-129 124.3 76.4 84.1
Subject 374 39 374
Annot | Symbols: IDH-V | isocitrate dehydrogenase V | chr5:794043-795939 FORWARD LENGTH=374
NR ref|NP_001042725.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 301 1 301 e-151 120.3 93 95.7
Subject 362 1 362
Annot Os01g0276100 [Oryza sativa Japonica Group] gi|6539562|dbj|BAA88179.1| putative isocitrate dehydrogenase [Oryza sativa Japonica Group] gi|81686717|dbj|BAE48299.1| NAD-dependent isocitrate dehydrogenase a [Oryza sativa Japonica Group] gi|113532256|dbj|BAF04639.1| Os01g0276100 [Oryza sativa Japonica Group] gi|125569901|gb|EAZ11416.1| hypothetical protein OsJ_01284 [Oryza sativa Japonica Group] gi|215765348|dbj|BAG87045.1| unnamed protein product [Oryza sativa Japonica Group]
IRGSP Os01t0276100-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 301 1 301 e-154 120.3 93 95.7
Subject 362 1 362
Annot
Sbicolor Sobic.003G129900.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 301 1 301 e-151 121.3 92 95.3
Subject 365 1 365
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00043.1.g02860.1.sm.mkhc length: 301 aa.
IPR001804 Isocitrate and isopropylmalate dehydrogenases family
method AccNumber shortName E-value location
Molecular Function GO:0000287 magnesium ion binding    
Molecular Function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    
Molecular Function GO:0051287 NAD binding    
Biological Process GO:0055114 oxidation-reduction process    
HMMPanther PTHR11835 DECARBOXYLATING 2.6e-136 23-301
IPR024084 Isopropylmalate dehydrogenase-like domain
Molecular Function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    
Biological Process GO:0055114 oxidation-reduction process    
Gene3D G3DSA:3.40.718.10 no description 1.7e-19 30-238
239-301
HMMPfam PF00180 Iso_dh 7.2e-13 35-238
239-297
no_ID  
Seg seg seg NA 3-15
superfamily SSF53659 Isocitrate/Isopropylmalate 1.1e-87 6-301
Pseudomolecule
Chromosome Start End Strand
5965288969189-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00043.1 maker exon 1400874 1400974 . + . ID=Zjn_sc00043.1.g02860.1.sm.mkhc:exon:1
Zjn_sc00043.1 maker exon 1401220 1401390 . + . ID=Zjn_sc00043.1.g02860.1.sm.mkhc:exon:2
Zjn_sc00043.1 maker exon 1402578 1402898 . + . ID=Zjn_sc00043.1.g02860.1.sm.mkhc:exon:3
Zjn_sc00043.1 maker exon 1402980 1403141 . + . ID=Zjn_sc00043.1.g02860.1.sm.mkhc:exon:4
Zjn_sc00043.1 maker exon 1403252 1403326 . + . ID=Zjn_sc00043.1.g02860.1.sm.mkhc:exon:5
Zjn_sc00043.1 maker exon 1404111 1404775 . + . ID=Zjn_sc00043.1.g02860.1.sm.mkhc:exon:6

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