Z. japonica Nagirizaki
Zjn_sc00043.1.g02050.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 No_hits
NR ref|NP_001141820.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 397 1 311 5e-65 133 42.6 51.6
Subject 528 1 322
Annot uncharacterized LOC100273961 [Zea mays] gi|194706054|gb|ACF87111.1| unknown [Zea mays] gi|414876881|tpg|DAA54012.1| TPA: F-box domain containing protein [Zea mays]
IRGSP Os01t0596100-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 397 10 259 1e-12 131 20.7 30.2
Subject 520 53 299
Annot
Sbicolor Sobic.003G118500.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 397 1 311 2e-58 132.7 42.8 51.6
Subject 527 1 322
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00043.1.g02050.1.am.mk length: 397 aa.
IPR001810 F-box domain
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
ProfileScan PS50181 FBOX 8.544 23-59
superfamily SSF81383 F-box 5.1e-08 24-62
IPR002059 Cold-shock protein, DNA-binding
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF00313 CSD 6.9e-07 343-376
IPR012340 Nucleic acid-binding, OB-fold
Gene3D G3DSA:2.40.50.140 no description 6e-06 343-375
superfamily SSF50249 Nucleic 6.1e-06 332-376
no_ID  
Gene3D G3DSA:3.80.10.10 no description 1.4e-12 138-249
HMMPanther PTHR32212 FAMILY 3.8e-14 4-77
Seg seg seg NA 78-98
325-342
Pseudomolecule
Chromosome Start End Strand
513132911314669+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00043.1 maker_non_over exon 1055394 1055661 . - . ID=Zjn_sc00043.1.g02050.1.am.mk:exon:3
Zjn_sc00043.1 maker_non_over exon 1055822 1056381 . - . ID=Zjn_sc00043.1.g02050.1.am.mk:exon:2
Zjn_sc00043.1 maker_non_over exon 1056407 1056772 . - . ID=Zjn_sc00043.1.g02050.1.am.mk:exon:1

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