Z. japonica Nagirizaki
Zjn_sc00043.1.g01790.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G16830.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1060 27 1060 0.0 106.7 70.6 81.1
Subject 1131 5 1131
Annot | Symbols: TPR2 | TOPLESS-related 2 | chr3:5731709-5737531 FORWARD LENGTH=1131
NR ref|XP_004967836.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1060 27 1060 0.0 106.6 90.5 93.7
Subject 1130 5 1130
Annot PREDICTED: topless-related protein 2 isoform X1 [Setaria italica]
IRGSP Os01t0254100-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1060 27 1060 0.0 106.5 87.2 92
Subject 1129 5 1129
Annot
Sbicolor Sobic.003G115900.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1060 27 1060 0.0 106.1 89.8 92.9
Subject 1125 5 1125
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00043.1.g01790.1.sm.mkhc length: 1060 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 1.2e-05 400-438
442-480
HMMSmart SM00320 WD40 83 339-378
397-438
440-481
484-527
530-573
780-821
824-864
930-966
989-1021
ProfileScan PS50082 WD_REPEATS_2 9.071 404-439
551-582
IPR006594 LisH dimerisation motif
Molecular Function GO:0005515 protein binding    
HMMSmart SM00667 Lissencephaly 1.7e-05 26-58
ProfileScan PS50896 LISH 10.412 26-58
IPR006595 CTLH, C-terminal LisH motif
HMMSmart SM00668 C-terminal 5.3e-15 56-114
ProfileScan PS50897 CTLH 13.903 56-114
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.4e-12 333-618
704-855
856-1021
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 11.629 345-582
superfamily SSF50978 WD40 5.4e-28 346-629
739-1024
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 425-439
IPR027728 Topless family
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPanther PTHR22847:SF106SUBFAMILY NOT 4.5e-304 117-1044
no_ID  
HMMPanther PTHR22847 WD40 4.5e-304 117-1044
Seg seg seg NA 276-291
738-750
991-1003
1044-1055
Pseudomolecule
Chromosome Start End Strand
514465381460309+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00043.1 maker exon 909754 909822 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:24
Zjn_sc00043.1 maker exon 910017 910374 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:23
Zjn_sc00043.1 maker exon 910904 911079 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:22
Zjn_sc00043.1 maker exon 911167 911349 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:21
Zjn_sc00043.1 maker exon 912436 912564 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:20
Zjn_sc00043.1 maker exon 912638 912814 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:19
Zjn_sc00043.1 maker exon 912898 913008 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:18
Zjn_sc00043.1 maker exon 913073 913228 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:17
Zjn_sc00043.1 maker exon 913320 913415 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:16
Zjn_sc00043.1 maker exon 913508 913675 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:15
Zjn_sc00043.1 maker exon 913753 913996 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:14
Zjn_sc00043.1 maker exon 914072 914199 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:13
Zjn_sc00043.1 maker exon 914704 914796 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:12
Zjn_sc00043.1 maker exon 914883 914978 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:11
Zjn_sc00043.1 maker exon 915723 915832 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:10
Zjn_sc00043.1 maker exon 915969 916104 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:9
Zjn_sc00043.1 maker exon 916185 916252 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:8
Zjn_sc00043.1 maker exon 916773 916893 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:7
Zjn_sc00043.1 maker exon 916981 917155 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:6
Zjn_sc00043.1 maker exon 917252 917410 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:5
Zjn_sc00043.1 maker exon 917524 917637 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:4
Zjn_sc00043.1 maker exon 917736 917915 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:3
Zjn_sc00043.1 maker exon 919096 919161 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:2
Zjn_sc00043.1 maker exon 923413 923525 . - . ID=Zjn_sc00043.1.g01790.1.sm.mkhc:exon:1

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