Z. japonica Nagirizaki
Zjn_sc00043.1.g01770.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G18590.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 103 1 86 1e-16 102.9 41.7 57.3
Subject 106 1 85
Annot | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr4:10236524-10236940 FORWARD LENGTH=106
NR ref|XP_002457577.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 103 1 86 1e-27 85.4 62.1 72.8
Subject 88 1 85
Annot hypothetical protein SORBIDRAFT_03g009730 [Sorghum bicolor] gi|241929552|gb|EES02697.1| hypothetical protein SORBIDRAFT_03g009730 [Sorghum bicolor]
IRGSP Os01t0253600-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 103 1 86 6e-26 102.9 53.4 63.1
Subject 106 1 85
Annot
Sbicolor Sobic.003G115400.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 103 1 86 4e-31 102.9 62.1 72.8
Subject 106 1 85
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00043.1.g01770.1.sm.mkhc length: 103 aa.
IPR012340 Nucleic acid-binding, OB-fold
method AccNumber shortName E-value location
Gene3D G3DSA:2.40.50.140 no description 9.3e-07 5-84
superfamily SSF50249 Nucleic 9.9e-10 3-85
IPR013970 Replication factor A protein 3
HMMPfam PF08661 Rep_fac-A_3 1.1e-12 1-86
no_ID  
Seg seg seg NA 21-31
Pseudomolecule
Chromosome Start End Strand
514651641467122+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00043.1 maker exon 902941 902993 . - . ID=Zjn_sc00043.1.g01770.1.sm.mkhc:exon:3
Zjn_sc00043.1 maker exon 904083 904343 . - . ID=Zjn_sc00043.1.g01770.1.sm.mkhc:exon:2
Zjn_sc00043.1 maker exon 904795 904899 . - . ID=Zjn_sc00043.1.g01770.1.sm.mkhc:exon:1

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