Z. japonica Nagirizaki
Zjn_sc00043.1.g01380.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT1G27980.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
351 |
1 |
292 |
e-109 |
155 |
57.8 |
67.5 |
| Subject |
544 |
67 |
369 |
|
| Annot |
| Symbols: DPL1, ATDPL1 | dihydrosphingosine phosphate lyase | chr1:9748812-9752618 FORWARD LENGTH=544 |
| NR |
ref|XP_004967900.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
351 |
1 |
292 |
e-140 |
152.4 |
71.5 |
77.8 |
| Subject |
535 |
58 |
360 |
|
| Annot |
PREDICTED: sphingosine-1-phosphate lyase [Setaria italica] |
| IRGSP |
Os01t0100900-01_chr01_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
351 |
1 |
342 |
e-139 |
153.6 |
73.2 |
81.2 |
| Subject |
539 |
62 |
417 |
|
| Annot |
|
| Sbicolor |
Sobic.003G109100.1.p|Chr03|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
351 |
1 |
292 |
e-138 |
151.9 |
69.5 |
76.9 |
| Subject |
533 |
58 |
358 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00043.1.g01380.1.sm.mkhc |
length: 351 aa. |
| IPR002129 |
Pyridoxal phosphate-dependent decarboxylase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0016831 |
carboxy-lyase activity |
|
|
| Biological Process |
GO:0019752 |
carboxylic acid metabolic process |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| HMMPfam |
PF00282 |
Pyridoxal_deC |
4.7e-08 |
108-210 |
| IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| Gene3D |
G3DSA:3.40.640.10 |
no description |
2.3e-28 |
87-294 |
| IPR015424 |
Pyridoxal phosphate-dependent transferase |
| superfamily |
SSF53383 |
PLP-dependent |
1.4e-47 |
11-295 |
| no_ID |
|
| HMMPanther |
PTHR11999 |
GROUP |
4.5e-110 |
1-292 |
| HMMPanther |
PTHR11999:SF5 |
SPHINGOSINE |
4.5e-110 |
1-292 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 5 | 1627142 | 1632935 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00043.1 |
maker |
exon |
737128 |
737594 |
. |
- |
. |
ID=Zjn_sc00043.1.g01380.1.sm.mkhc:exon:11 |
| Zjn_sc00043.1 |
maker |
exon |
738746 |
738802 |
. |
- |
. |
ID=Zjn_sc00043.1.g01380.1.sm.mkhc:exon:10 |
| Zjn_sc00043.1 |
maker |
exon |
739281 |
739407 |
. |
- |
. |
ID=Zjn_sc00043.1.g01380.1.sm.mkhc:exon:9 |
| Zjn_sc00043.1 |
maker |
exon |
739456 |
739508 |
. |
- |
. |
ID=Zjn_sc00043.1.g01380.1.sm.mkhc:exon:8 |
| Zjn_sc00043.1 |
maker |
exon |
740626 |
740676 |
. |
- |
. |
ID=Zjn_sc00043.1.g01380.1.sm.mkhc:exon:7 |
| Zjn_sc00043.1 |
maker |
exon |
740894 |
741035 |
. |
- |
. |
ID=Zjn_sc00043.1.g01380.1.sm.mkhc:exon:6 |
| Zjn_sc00043.1 |
maker |
exon |
741140 |
741364 |
. |
- |
. |
ID=Zjn_sc00043.1.g01380.1.sm.mkhc:exon:5 |
| Zjn_sc00043.1 |
maker |
exon |
741749 |
741808 |
. |
- |
. |
ID=Zjn_sc00043.1.g01380.1.sm.mkhc:exon:4 |
| Zjn_sc00043.1 |
maker |
exon |
741921 |
742078 |
. |
- |
. |
ID=Zjn_sc00043.1.g01380.1.sm.mkhc:exon:3 |
| Zjn_sc00043.1 |
maker |
exon |
742732 |
742777 |
. |
- |
. |
ID=Zjn_sc00043.1.g01380.1.sm.mkhc:exon:2 |
| Zjn_sc00043.1 |
maker |
exon |
742908 |
742921 |
. |
- |
. |
ID=Zjn_sc00043.1.g01380.1.sm.mkhc:exon:1 |