Z. japonica Nagirizaki
Zjn_sc00043.1.g01020.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G62790.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 473 5 473 0.0 100.8 83.9 90.5
Subject 477 4 477
Annot | Symbols: DXR, PDE129 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase | chr5:25214358-25217292 REVERSE LENGTH=477
NR ref|XP_004967950.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 473 3 473 0.0 99.8 94.7 97.7
Subject 472 2 472
Annot PREDICTED: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic [Setaria italica]
IRGSP Os01t0106900-02_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 473 4 472 0.0 100 92 95.1
Subject 473 2 472
Annot
Sbicolor Sobic.003G103300.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 473 3 473 0.0 99.8 94.7 97.5
Subject 472 2 472
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00043.1.g01020.1.sm.mkhc length: 473 aa.
IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase
method AccNumber shortName E-value location
Biological Process GO:0008299 isoprenoid biosynthetic process    
Molecular Function GO:0030604 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity    
Molecular Function GO:0046872 metal ion binding    
Biological Process GO:0055114 oxidation-reduction process    
HAMAP MF_00183 DXP_reductoisom 45.638 79-462
HMMPIR PIRSF006205 1-deoxy-D-xylulose 8e-244 76-469
HMMPanther PTHR30525 1-DEOXY-D-XYLULOSE 1e-231 27-472
HMMTigr TIGR00243 Dxr: 1.1e-160 77-459
IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal
Biological Process GO:0055114 oxidation-reduction process    
Molecular Function GO:0070402 NADPH binding    
HMMPfam PF02670 DXP_reductoisom 1.1e-47 79-207
IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal
Molecular Function GO:0005515 protein binding    
HMMPfam PF08436 DXP_redisom_C 2e-38 221-304
IPR016040 NAD(P)-binding domain
Gene3D G3DSA:3.40.50.720 no description 2e-63 70-225
IPR026877 DXP reductoisomerase C-terminal domain
HMMPfam PF13288 DXPR_C 2.8e-41 336-459
superfamily SSF69055 1-deoxy-D-xylulose-5-phosphate 1.2e-30 369-468
no_ID  
Gene3D G3DSA:1.10.1740.10 no description 1.1e-26 382-462
HMMPanther PTHR30525:SF0 1-DEOXY-D-XYLULOSE 1e-231 27-472
superfamily SSF51735 NAD(P)-binding 3.5e-51 75-225
superfamily SSF55347 Glyceraldehyde-3-phosphate 3.4e-61 202-339
Pseudomolecule
Chromosome Start End Strand
518101141819013-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00043.1 maker exon 551050 551262 . + . ID=Zjn_sc00043.1.g01020.1.sm.mkhc:exon:1
Zjn_sc00043.1 maker exon 552141 552322 . + . ID=Zjn_sc00043.1.g01020.1.sm.mkhc:exon:2
Zjn_sc00043.1 maker exon 552659 552745 . + . ID=Zjn_sc00043.1.g01020.1.sm.mkhc:exon:3
Zjn_sc00043.1 maker exon 552902 553027 . + . ID=Zjn_sc00043.1.g01020.1.sm.mkhc:exon:4
Zjn_sc00043.1 maker exon 553363 553425 . + . ID=Zjn_sc00043.1.g01020.1.sm.mkhc:exon:5
Zjn_sc00043.1 maker exon 553887 554036 . + . ID=Zjn_sc00043.1.g01020.1.sm.mkhc:exon:6
Zjn_sc00043.1 maker exon 554278 554345 . + . ID=Zjn_sc00043.1.g01020.1.sm.mkhc:exon:7
Zjn_sc00043.1 maker exon 554431 554542 . + . ID=Zjn_sc00043.1.g01020.1.sm.mkhc:exon:8
Zjn_sc00043.1 maker exon 554628 554732 . + . ID=Zjn_sc00043.1.g01020.1.sm.mkhc:exon:9
Zjn_sc00043.1 maker exon 554842 554963 . + . ID=Zjn_sc00043.1.g01020.1.sm.mkhc:exon:10
Zjn_sc00043.1 maker exon 555450 555596 . + . ID=Zjn_sc00043.1.g01020.1.sm.mkhc:exon:11
Zjn_sc00043.1 maker exon 556422 559949 . + . ID=Zjn_sc00043.1.g01020.1.sm.mkhc:exon:12

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