Z. japonica Nagirizaki
Zjn_sc00043.1.g00110.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G68320.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 314 15 203 1e-35 91.1 30.3 37.9
Subject 286 18 219
Annot | Symbols: MYB62, AtMYB62, BW62B, BW62C | myb domain protein 62 | chr1:25603842-25604884 FORWARD LENGTH=286
NR ref|XP_006643700.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 314 4 314 1e-80 114 64 70.1
Subject 358 12 358
Annot PREDICTED: transcription repressor MYB4-like [Oryza brachyantha]
IRGSP Os01t0128000-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 314 4 314 1e-75 111.5 63.7 70.7
Subject 350 12 350
Annot
Sbicolor Sobic.003G087600.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 314 2 314 4e-80 123.9 65.6 72.9
Subject 389 12 389
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00043.1.g00110.1.am.mk length: 314 aa.
IPR001005 SANT/Myb domain
method AccNumber shortName E-value location
Molecular Function GO:0003682 chromatin binding    
HMMPfam PF00249 Myb_DNA-binding 7.3e-15 18-65
HMMSmart SM00717 SANT 1.2e-13 17-67
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 0.00039 16-64
65-88
superfamily SSF46689 Homeodomain-like 3.7e-19 17-83
IPR017930 Myb domain
ProfileScan PS51294 HTH_MYB 22.620 13-69
no_ID  
HMMPanther PTHR10641 MYB-LIKE 1.4e-47 5-87
HMMPanther PTHR10641:SF199SUBFAMILY NOT 1.4e-47 5-87
Seg seg seg NA 174-192
228-238
255-270
Pseudomolecule
Chromosome Start End Strand
522929372294241-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00043.1 maker_non_over exon 75822 75966 . + . ID=Zjn_sc00043.1.g00110.1.am.mk:exon:1
Zjn_sc00043.1 maker_non_over exon 76091 76208 . + . ID=Zjn_sc00043.1.g00110.1.am.mk:exon:2
Zjn_sc00043.1 maker_non_over exon 76445 77126 . + . ID=Zjn_sc00043.1.g00110.1.am.mk:exon:3

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