Z. japonica Nagirizaki
Zjn_sc00042.1.g00470.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 No_hits
NR ref|NP_001051814.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 96 1 66 3e-15 429.2 49 56.3
Subject 412 93 180
Annot Os03g0834000 [Oryza sativa Japonica Group] gi|62510683|sp|Q75LI2.1|FEN12_ORYSJ RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName: Full=Flap structure-specific endonuclease 1-B; AltName: Full=OsFEN-1b gi|317374867|sp|B8AMS4.1|FEN12_ORYSI RecName: Full=Flap endonuclease 1-B; Short=FEN-1-B; AltName: Full=Flap structure-specific endonuclease 1-B gi|40714676|gb|AAR88582.1| flap endonuclease-1b [Oryza sativa Japonica Group] gi|108711942|gb|ABF99737.1| Flap endonuclease-1b, putative, expressed [Oryza sativa Japonica Group] gi|113550285|dbj|BAF13728.1| Os03g0834000 [Oryza sativa Japonica Group] gi|215692762|dbj|BAG88230.1| unnamed protein product [Oryza sativa Japonica Group] gi|218194043|gb|EEC76470.1| hypothetical protein OsI_14202 [Oryza sativa Indica Group] gi|222626117|gb|EEE60249.1| hypothetical protein OsJ_13256 [Oryza sativa Japonica Group]
IRGSP Os03t0834000-01_chr03_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 96 1 66 2e-18 429.2 49 56.3
Subject 412 93 180
Annot
Sbicolor Sobic.001G027100.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 96 1 66 1e-18 428.1 50 56.3
Subject 411 93 180
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00042.1.g00470.1.sm.mkhc length: 96 aa.
IPR006086 XPG-I domain
method AccNumber shortName E-value location
Molecular Function GO:0004518 nuclease activity    
HMMPfam PF00867 XPG_I 1.6e-06 38-66
no_ID  
Gene3D G3DSA:3.40.50.1010 no description 0.00013 39-66
superfamily SSF88723 PIN 1.9e-08 1-67
Pseudomolecule
Chromosome Start End Strand
1224839192486276+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00042.1 maker exon 563603 563893 . + . ID=Zjn_sc00042.1.g00470.1.sm.mkhc:exon:1
Zjn_sc00042.1 maker exon 563983 564031 . + . ID=Zjn_sc00042.1.g00470.1.sm.mkhc:exon:2
Zjn_sc00042.1 maker exon 564142 564189 . + . ID=Zjn_sc00042.1.g00470.1.sm.mkhc:exon:3
Zjn_sc00042.1 maker exon 565040 565090 . + . ID=Zjn_sc00042.1.g00470.1.sm.mkhc:exon:4
Zjn_sc00042.1 maker exon 565496 565600 . + . ID=Zjn_sc00042.1.g00470.1.sm.mkhc:exon:5
Zjn_sc00042.1 maker exon 565949 565960 . + . ID=Zjn_sc00042.1.g00470.1.sm.mkhc:exon:6

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