Z. japonica Nagirizaki
Zjn_sc00041.1.g02470.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G17120.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 358 52 266 1e-37 97.8 23.7 34.1
Subject 350 11 219
Annot | Symbols: LYM2 | lysm domain GPI-anchored protein 2 precursor | chr2:7459156-7460648 FORWARD LENGTH=350
NR gb|EEE70160.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 358 51 351 e-111 224.3 62 70.7
Subject 803 6 362
Annot hypothetical protein OsJ_30230 [Oryza sativa Japonica Group]
IRGSP Os09t0548200-01_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 358 51 357 e-114 104.2 62.3 71.2
Subject 373 10 372
Annot
Sbicolor Sobic.002G286700.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 358 67 358 e-112 104.2 64.5 69.8
Subject 373 26 373
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00041.1.g02470.1.am.mk length: 358 aa.
IPR018392 Peptidoglycan-binding lysin domain
method AccNumber shortName E-value location
Biological Process GO:0016998 cell wall macromolecule catabolic process    
HMMPfam PF01476 LysM 1e-06 157-203
221-264
HMMSmart SM00257 Lysin 2.6e-07 156-203
220-264
no_ID  
Gene3D G3DSA:3.10.350.10 no description 9.8e-08 156-204
220-264
Seg seg seg NA 34-69
126-135
301-315
341-352
superfamily SSF54106 LysM 1.3e-06 218-266
154-205
Pseudomolecule
Chromosome Start End Strand
2048118484818612+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00041.1 maker_non_over exon 2246036 2246172 . - . ID=Zjn_sc00041.1.g02470.1.am.mk:exon:4
Zjn_sc00041.1 maker_non_over exon 2246273 2246413 . - . ID=Zjn_sc00041.1.g02470.1.am.mk:exon:3
Zjn_sc00041.1 maker_non_over exon 2251869 2252565 . - . ID=Zjn_sc00041.1.g02470.1.am.mk:exon:2
Zjn_sc00041.1 maker_non_over exon 2252699 2252800 . - . ID=Zjn_sc00041.1.g02470.1.am.mk:exon:1

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