Z. japonica Nagirizaki
Zjn_sc00041.1.g01920.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G02080.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 193 11 174 9e-77 267.4 66.3 74.1
Subject 516 27 196
Annot | Symbols: AtIDD4, IDD4 | indeterminate(ID)-domain 4 | chr2:518328-521170 REVERSE LENGTH=516
NR ref|XP_002462813.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 193 1 187 1e-87 276.2 82.4 85.5
Subject 533 1 196
Annot hypothetical protein SORBIDRAFT_02g032400 [Sorghum bicolor] gi|241926190|gb|EER99334.1| hypothetical protein SORBIDRAFT_02g032400 [Sorghum bicolor]
IRGSP Os09t0555700-03_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 193 1 187 8e-85 277.2 79.3 85
Subject 535 1 201
Annot
Sbicolor Sobic.002G293000.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 193 1 187 2e-90 276.2 82.4 85.5
Subject 533 1 196
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00041.1.g01920.1.sm.mk length: 193 aa.
IPR007087 Zinc finger, C2H2
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
HMMPfam PF00096 zf-C2H2 0.022 137-159
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 63-83
ProfileScan PS50157 ZINC_FINGER_C2H2_2 11.094 61-83
IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function GO:0003676 nucleic acid binding    
Gene3D G3DSA:3.30.160.60 no description 7.8e-05 60-83
125-158
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 1.1e+02 61-83
102-132
137-157
IPR022755 Zinc finger, double-stranded RNA binding
HMMPfam PF12171 zf-C2H2_jaz 1.8e-05 60-83
no_ID  
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 1.5e-111 42-183
HMMPanther PTHR10593:SF17 SUBFAMILY 1.5e-111 42-183
Seg seg seg NA 2-10
20-45
superfamily SSF57667 C2H2 2.4e-08 59-158
Pseudomolecule
Chromosome Start End Strand
2051974765198209-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00041.1 maker_non_over exon 1866439 1866562 . + . ID=Zjn_sc00041.1.g01920.1.sm.mk:exon:1
Zjn_sc00041.1 maker_non_over exon 1866715 1867172 . + . ID=Zjn_sc00041.1.g01920.1.sm.mk:exon:2

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