Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00040.1.g05900.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00040.1)

BLAST

TAIR10	AT2G38120.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	487	4	487	0.0	99.6	81.5	88.5
		Subject	485	2	483
		Annot	\| Symbols: AUX1, WAV5, PIR1, MAP1 \| Transmembrane amino acid transporter family protein \| chr2:15973493-15976792 FORWARD LENGTH=485
NR	ref\|NP_001151566.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	487	1	487	0.0	100.6	93.6	96.3
		Subject	490	1	490
		Annot	auxin transporter-like protein 1 [Zea mays] gi\|195647796\|gb\|ACG43366.1\| auxin transporter-like protein 1 [Zea mays]
IRGSP	Os01t0856500-02_chr01_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	487	3	487	0.0	101	91.8	94.7
		Subject	492	4	492
		Annot
Sbicolor	Sobic.003G361300.1.p\|Chr03\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	487	1	487	0.0	101.2	94.5	96.5
		Subject	493	1	493
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR013057	Amino acid transporter, transmembrane
Zjn_sc00040.1.g05900.1.sm.mkhc				length: 487 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF01490	Aa_trans	7.7e-81	48-441
no_ID
HMMPanther	PTHR22950	AMINO	0	3-469
HMMPanther	PTHR22950:SF13	PREDICTED:	0	3-469
Seg	seg	seg	NA	17-38 436-449 472-485

Pseudomolecule

Chromosome	Start	End	Strand
6	16959107	16963835	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00040.1	maker	exon	2505489	2505688	.	+	.	ID=Zjn_sc00040.1.g05900.1.sm.mkhc:exon:1
Zjn_sc00040.1	maker	exon	2505788	2505973	.	+	.	ID=Zjn_sc00040.1.g05900.1.sm.mkhc:exon:2
Zjn_sc00040.1	maker	exon	2506365	2506477	.	+	.	ID=Zjn_sc00040.1.g05900.1.sm.mkhc:exon:3
Zjn_sc00040.1	maker	exon	2506564	2506747	.	+	.	ID=Zjn_sc00040.1.g05900.1.sm.mkhc:exon:4
Zjn_sc00040.1	maker	exon	2506848	2506945	.	+	.	ID=Zjn_sc00040.1.g05900.1.sm.mkhc:exon:5
Zjn_sc00040.1	maker	exon	2508605	2509070	.	+	.	ID=Zjn_sc00040.1.g05900.1.sm.mkhc:exon:6
Zjn_sc00040.1	maker	exon	2509937	2510217	.	+	.	ID=Zjn_sc00040.1.g05900.1.sm.mkhc:exon:7