Z. japonica Nagirizaki
Zjn_sc00040.1.g05580.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G39940.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 592 13 583 0.0 100 57.4 72.6
Subject 592 10 582
Annot | Symbols: COI1 | RNI-like superfamily protein | chr2:16672848-16675486 REVERSE LENGTH=592
NR ref|XP_002456649.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 592 1 592 0.0 100.7 87.3 93.8
Subject 596 1 596
Annot hypothetical protein SORBIDRAFT_03g040150 [Sorghum bicolor] gi|241928624|gb|EES01769.1| hypothetical protein SORBIDRAFT_03g040150 [Sorghum bicolor]
IRGSP Os01t0853400-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 592 1 592 0.0 100.5 87.2 92.4
Subject 595 1 595
Annot
Sbicolor Sobic.003G359600.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 592 1 592 0.0 100.7 87.3 93.8
Subject 596 1 596
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00040.1.g05580.1.am.mkhc length: 592 aa.
IPR001810 F-box domain
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
superfamily SSF81383 F-box 8.7e-06 19-50
IPR006553 Leucine-rich repeat, cysteine-containing subtype
HMMSmart SM00367 Leucine-rich 4.2e+02 140-165
166-193
435-461
487-510
no_ID  
Gene3D G3DSA:3.80.10.10 no description 5e-06 283-397
398-522
HMMPanther PTHR23125 F-BOX/LEUCINE 0 16-545
HMMPanther PTHR23125:SF94 SUBFAMILY 0 16-545
HMMPfam PF12937 F-box-like 1.4e-05 20-50
Seg seg seg NA 353-364
superfamily SSF52047 RNI-like 4.4e-27 61-541
Pseudomolecule
Chromosome Start End Strand
61683358716836834+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00040.1 maker exon 2379969 2380468 . + . ID=Zjn_sc00040.1.g05580.1.am.mkhc:exon:1
Zjn_sc00040.1 maker exon 2381573 2382047 . + . ID=Zjn_sc00040.1.g05580.1.am.mkhc:exon:2
Zjn_sc00040.1 maker exon 2382135 2383216 . + . ID=Zjn_sc00040.1.g05580.1.am.mkhc:exon:3

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