Z. japonica Nagirizaki
Zjn_sc00040.1.g01030.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G27450.3 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 672 310 666 e-112 56.3 31.3 40.3
Subject 378 1 346
Annot | Symbols: MK | mevalonate kinase | chr5:9691051-9692975 FORWARD LENGTH=378
NR ref|XP_004958043.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 672 310 666 e-163 57.6 44.3 47.8
Subject 387 1 351
Annot PREDICTED: mevalonate kinase-like [Setaria italica]
IRGSP Os10t0329300-03_chr10_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 672 310 668 e-161 59.7 44.2 47.2
Subject 401 1 357
Annot
Sbicolor Sobic.004G012400.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 672 311 666 e-159 60 43.5 46
Subject 403 15 367
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00040.1.g01030.1.am.mkhc length: 672 aa.
IPR006203 GHMP kinase, ATP-binding, conserved site
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
PatternScan PS00627 GHMP_KINASES_ATP NA 454-465
IPR006204 GHMP kinase N-terminal domain
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00288 GHMP_kinases_N 7.9e-19 447-529
IPR006205 Mevalonate kinase
Molecular Function GO:0004496 mevalonate kinase activity    
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005737 cytoplasm    
Biological Process GO:0008299 isoprenoid biosynthetic process    
HMMPanther PTHR10457:SF4 MEVALONATE 1.7e-101 311-667
HMMTigr TIGR00549 mevalon_kin: 9.2e-74 316-663
IPR006206 Mevalonate/galactokinase
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005737 cytoplasm    
Biological Process GO:0008152 metabolic process    
Molecular Function GO:0016301 kinase activity    
Molecular Function GO:0016773 phosphotransferase activity, alcohol group as acceptor    
FPrintScan PR00959 MEVGALKINASE 2e-28 316-340
452-474
511-530
648-665
IPR013750 GHMP kinase, C-terminal domain
HMMPfam PF08544 GHMP_kinases_C 4.1e-06 612-665
IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup
Gene3D G3DSA:3.30.230.10 no description 1.7e-64 309-556
IPR020568 Ribosomal protein S5 domain 2-type fold
superfamily SSF54211 Ribosomal 4.5e-34 310-543
no_ID  
Gene3D G3DSA:3.30.70.890 no description 1.3e-36 557-666
HMMPanther PTHR10457 MEVALONATE 1.7e-101 311-667
Seg seg seg NA 216-232
472-489
588-600
superfamily SSF55060 GHMP 5.9e-27 544-666
Pseudomolecule
Chromosome Start End Strand
61488589214892422-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00040.1 maker exon 432274 433142 . - . ID=Zjn_sc00040.1.g01030.1.am.mkhc:exon:10
Zjn_sc00040.1 maker exon 433479 433738 . - . ID=Zjn_sc00040.1.g01030.1.am.mkhc:exon:9
Zjn_sc00040.1 maker exon 433816 434083 . - . ID=Zjn_sc00040.1.g01030.1.am.mkhc:exon:8
Zjn_sc00040.1 maker exon 434151 434286 . - . ID=Zjn_sc00040.1.g01030.1.am.mkhc:exon:7
Zjn_sc00040.1 maker exon 435549 435852 . - . ID=Zjn_sc00040.1.g01030.1.am.mkhc:exon:6
Zjn_sc00040.1 maker exon 436363 436637 . - . ID=Zjn_sc00040.1.g01030.1.am.mkhc:exon:5
Zjn_sc00040.1 maker exon 436715 436884 . - . ID=Zjn_sc00040.1.g01030.1.am.mkhc:exon:4
Zjn_sc00040.1 maker exon 436957 437024 . - . ID=Zjn_sc00040.1.g01030.1.am.mkhc:exon:3
Zjn_sc00040.1 maker exon 437122 437166 . - . ID=Zjn_sc00040.1.g01030.1.am.mkhc:exon:2
Zjn_sc00040.1 maker exon 438746 438804 . - . ID=Zjn_sc00040.1.g01030.1.am.mkhc:exon:1

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