Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00040.1.g00790.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00040.1)

BLAST

TAIR10	AT1G69370.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	205	68	205	1e-40	154.1	44.4	52.2
		Subject	316	131	316
		Annot	\| Symbols: CM3, cm-3 \| chorismate mutase 3 \| chr1:26080098-26081559 FORWARD LENGTH=316
NR	gb\|ACN37057.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	205	31	205	5e-53	117.6	58	67.3
		Subject	241	27	241
		Annot	unknown [Zea mays] gi\|413952339\|gb\|AFW84988.1\| hypothetical protein ZEAMMB73_157098 [Zea mays]
IRGSP	Os01t0764400-01_chr01_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	205	63	205	2e-46	152.7	54.1	60
		Subject	313	123	313
		Annot
Sbicolor	Sobic.003G306100.1.p\|Chr03\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	205	63	205	1e-51	170.7	51.7	59
		Subject	350	160	350
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR008238	Chorismate mutase, AroQ class, eukaryotic type
Zjn_sc00040.1.g00790.1.sm.mkhc				length: 205 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0004106	chorismate mutase activity
Biological Process	GO:0009073	aromatic amino acid family biosynthetic process
Gene3D	G3DSA:1.10.590.10	no description	5e-42	67-97 98-205
HMMPanther	PTHR21145	CHORISMATE	4.2e-45	68-205
ProfileScan	PS51169	CHORISMATE_MUT_3	33.209	1-205
IPR020822	Chorismate mutase, type II
Biological Process	GO:0046417	chorismate metabolic process
superfamily	SSF48600	Chorismate	5.8e-45	68-205
no_ID
HMMPanther	PTHR21145:SF0	SUBFAMILY	4.2e-45	68-205
Seg	seg	seg	NA	139-151

Pseudomolecule

Chromosome	Start	End	Strand
6	14798689	14802127	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00040.1	maker	exon	345071	345444	.	-	.	ID=Zjn_sc00040.1.g00790.1.sm.mkhc:exon:4
Zjn_sc00040.1	maker	exon	345573	345665	.	-	.	ID=Zjn_sc00040.1.g00790.1.sm.mkhc:exon:3
Zjn_sc00040.1	maker	exon	346633	346719	.	-	.	ID=Zjn_sc00040.1.g00790.1.sm.mkhc:exon:2
Zjn_sc00040.1	maker	exon	348309	348509	.	-	.	ID=Zjn_sc00040.1.g00790.1.sm.mkhc:exon:1