Z. japonica Nagirizaki
Zjn_sc00039.1.g05630.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT4G10960.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
256 |
134 |
246 |
7e-49 |
137.1 |
34 |
38.3 |
| Subject |
351 |
235 |
345 |
|
| Annot |
| Symbols: UGE5 | UDP-D-glucose/UDP-D-galactose 4-epimerase 5 | chr4:6716083-6718472 REVERSE LENGTH=351 |
| NR |
ref|XP_004956582.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
256 |
134 |
256 |
5e-58 |
143.4 |
41 |
45.7 |
| Subject |
367 |
245 |
367 |
|
| Annot |
PREDICTED: UDP-glucose 4-epimerase 4-like [Setaria italica] |
| IRGSP |
Os09t0323000-01_chr09_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
256 |
134 |
255 |
1e-55 |
144.1 |
39.1 |
42.2 |
| Subject |
369 |
249 |
368 |
|
| Annot |
|
| Sbicolor |
Sobic.002G170100.1.p|Chr02|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
256 |
134 |
255 |
4e-60 |
143 |
40.6 |
45.3 |
| Subject |
366 |
244 |
365 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00039.1.g05630.1.sm.mkhc |
length: 256 aa. |
| IPR001509 |
NAD-dependent epimerase/dehydratase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Biological Process |
GO:0044237 |
cellular metabolic process |
|
|
| Molecular Function |
GO:0050662 |
coenzyme binding |
|
|
| HMMPfam |
PF01370 |
Epimerase |
5e-23 |
14-134 |
| IPR005886 |
UDP-glucose 4-epimerase GalE |
| Molecular Function |
GO:0003978 |
UDP-glucose 4-epimerase activity |
|
|
| Biological Process |
GO:0006012 |
galactose metabolic process |
|
|
| HMMPanther |
PTHR10366:SF39 |
UDP-GLUCOSE |
2.9e-106 |
7-252 |
| IPR016040 |
NAD(P)-binding domain |
| Gene3D |
G3DSA:3.40.50.720 |
no description |
2.4e-41 |
10-132 |
| IPR025308 |
UDP-glucose 4-epimerase C-terminal domain |
| HMMPfam |
PF13950 |
Epimerase_Csub |
2.2e-27 |
182-243 |
| no_ID |
|
| Gene3D |
G3DSA:3.90.25.10 |
no description |
3.4e-30 |
133-245 |
| HMMPanther |
PTHR10366 |
NAD |
2.9e-106 |
7-252 |
| Seg |
seg |
seg |
NA |
2-9 |
| superfamily |
SSF51735 |
NAD(P)-binding |
1.4e-51 |
12-247 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 19 | 12670394 | 12676091 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00039.1 |
maker |
exon |
2520040 |
2520252 |
. |
+ |
. |
ID=Zjn_sc00039.1.g05630.1.sm.mkhc:exon:1 |
| Zjn_sc00039.1 |
maker |
exon |
2522083 |
2522132 |
. |
+ |
. |
ID=Zjn_sc00039.1.g05630.1.sm.mkhc:exon:2 |
| Zjn_sc00039.1 |
maker |
exon |
2522254 |
2522389 |
. |
+ |
. |
ID=Zjn_sc00039.1.g05630.1.sm.mkhc:exon:3 |
| Zjn_sc00039.1 |
maker |
exon |
2524330 |
2524414 |
. |
+ |
. |
ID=Zjn_sc00039.1.g05630.1.sm.mkhc:exon:4 |
| Zjn_sc00039.1 |
maker |
exon |
2524825 |
2524907 |
. |
+ |
. |
ID=Zjn_sc00039.1.g05630.1.sm.mkhc:exon:5 |
| Zjn_sc00039.1 |
maker |
exon |
2525075 |
2525166 |
. |
+ |
. |
ID=Zjn_sc00039.1.g05630.1.sm.mkhc:exon:6 |
| Zjn_sc00039.1 |
maker |
exon |
2525250 |
2525737 |
. |
+ |
. |
ID=Zjn_sc00039.1.g05630.1.sm.mkhc:exon:7 |