Z. japonica Nagirizaki
Zjn_sc00039.1.g04800.1.am.mk
Sequence
-
BLAST
| TAIR10 |
AT5G65165.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
295 |
15 |
292 |
e-108 |
104.7 |
61 |
75.6 |
| Subject |
309 |
30 |
299 |
|
| Annot |
| Symbols: SDH2-3 | succinate dehydrogenase 2-3 | chr5:26034515-26035922 REVERSE LENGTH=309 |
| NR |
ref|XP_004959409.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
295 |
1 |
295 |
e-146 |
104.1 |
87.8 |
92.9 |
| Subject |
307 |
1 |
307 |
|
| Annot |
PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Setaria italica] |
| IRGSP |
Os09t0370300-01_chr09_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
295 |
1 |
294 |
e-122 |
105.4 |
79 |
87.1 |
| Subject |
311 |
2 |
310 |
|
| Annot |
|
| Sbicolor |
Sobic.002G185100.1.p|Chr02|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
295 |
4 |
295 |
e-139 |
124.1 |
86.1 |
92.5 |
| Subject |
366 |
57 |
366 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00039.1.g04800.1.am.mk |
length: 295 aa. |
| IPR001041 |
2Fe-2S ferredoxin-type domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0009055 |
electron carrier activity |
|
|
| Molecular Function |
GO:0051536 |
iron-sulfur cluster binding |
|
|
| superfamily |
SSF54292 |
2Fe-2S |
1.3e-31 |
58-161 |
| IPR004489 |
Succinate dehydrogenase/fumarate reductase iron-sulphur protein |
| Biological Process |
GO:0006099 |
tricarboxylic acid cycle |
|
|
| Molecular Function |
GO:0016491 |
oxidoreductase activity |
|
|
| Biological Process |
GO:0055114 |
oxidation-reduction process |
|
|
| HMMTigr |
TIGR00384 |
dhsB: |
5.9e-77 |
64-287 |
| IPR006058 |
2Fe-2S ferredoxin, iron-sulphur binding site |
| Molecular Function |
GO:0051537 |
2 iron, 2 sulfur cluster binding |
|
|
| PatternScan |
PS00197 |
2FE2S_FER_1 |
NA |
112-120 |
| IPR009051 |
Alpha-helical ferredoxin |
| Molecular Function |
GO:0051536 |
iron-sulfur cluster binding |
|
|
| superfamily |
SSF46548 |
alpha-helical |
5.2e-35 |
162-295 |
| IPR012675 |
Beta-grasp domain |
| Gene3D |
G3DSA:3.10.20.30 |
no description |
1.4e-38 |
54-161 |
| IPR017896 |
4Fe-4S ferredoxin-type, iron-sulpur binding domain |
| Molecular Function |
GO:0051536 |
iron-sulfur cluster binding |
|
|
| ProfileScan |
PS51379 |
4FE4S_FER_2 |
7.340 |
195-225 |
| IPR017900 |
4Fe-4S ferredoxin, iron-sulphur binding, conserved site |
| PatternScan |
PS00198 |
4FE4S_FER_1 |
NA |
205-216 |
| IPR025192 |
Succinate dehydogenase/fumarate reductase N-terminal |
| Molecular Function |
GO:0009055 |
electron carrier activity |
|
|
| Molecular Function |
GO:0051536 |
iron-sulfur cluster binding |
|
|
| HMMPfam |
PF13085 |
Fer2_3 |
9.1e-31 |
62-166 |
| no_ID |
|
| Gene3D |
G3DSA:1.10.1060.10 |
no description |
2.9e-43 |
163-291 |
| HMMPanther |
PTHR11921 |
SUCCINATE |
9.2e-128 |
41-295 |
| HMMPfam |
PF13534 |
Fer4_17 |
5.2e-09 |
204-278 |
| Seg |
seg |
seg |
NA |
30-51 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 19 | 13068513 | 13069400 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00039.1 |
maker_non_over |
exon |
2126731 |
2127618 |
. |
+ |
. |
ID=Zjn_sc00039.1.g04800.1.am.mk:exon:1 |