Z. japonica Nagirizaki
Zjn_sc00039.1.g04640.1.am.mkhc
Sequence
-
BLAST
| TAIR10 |
No_hits |
| NR |
ref|XP_004956691.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
205 |
56 |
201 |
6e-66 |
180.5 |
59.5 |
65.9 |
| Subject |
370 |
1 |
146 |
|
| Annot |
PREDICTED: putative F-box protein At2g02030 [Setaria italica] gi|835922313|ref|XP_012698815.1| PREDICTED: putative F-box protein At2g02030 [Setaria italica] |
| IRGSP |
Os09t0372900-02_chr09_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
205 |
53 |
201 |
2e-62 |
184.9 |
53.7 |
62 |
| Subject |
379 |
6 |
155 |
|
| Annot |
|
| Sbicolor |
Sobic.002G186400.1.p|Chr02|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
205 |
56 |
201 |
5e-69 |
180 |
60.5 |
65.9 |
| Subject |
369 |
1 |
145 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00039.1.g04640.1.am.mkhc |
length: 205 aa. |
| IPR001810 |
F-box domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF00646 |
F-box |
2.7e-08 |
72-110 |
| HMMSmart |
SM00256 |
A |
4.2e-05 |
71-111 |
| superfamily |
SSF81383 |
F-box |
1.3e-11 |
58-172 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
4.7e-08 |
72-107 |
| Seg |
seg |
seg |
NA |
2-13 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 19 | 13132671 | 13133580 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00039.1 |
maker |
exon |
2062551 |
2062596 |
. |
+ |
. |
ID=Zjn_sc00039.1.g04640.1.am.mkhc:exon:1 |
| Zjn_sc00039.1 |
maker |
exon |
2062712 |
2062757 |
. |
+ |
. |
ID=Zjn_sc00039.1.g04640.1.am.mkhc:exon:2 |
| Zjn_sc00039.1 |
maker |
exon |
2062870 |
2063381 |
. |
+ |
. |
ID=Zjn_sc00039.1.g04640.1.am.mkhc:exon:3 |
| Zjn_sc00039.1 |
maker |
exon |
2063447 |
2063460 |
. |
+ |
. |
ID=Zjn_sc00039.1.g04640.1.am.mkhc:exon:4 |