Z. japonica Nagirizaki
Zjn_sc00039.1.g02860.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G17420.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 360 1 360 e-114 285 64.7 73.3
Subject 1026 1 305
Annot | Symbols: IRX3, CESA7, ATCESA7, MUR10 | Cellulose synthase family protein | chr5:5736859-5741407 REVERSE LENGTH=1026
NR ref|XP_004956855.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 360 1 360 e-166 291.7 84.7 86.7
Subject 1050 1 330
Annot PREDICTED: cellulose synthase A catalytic subunit 9 [UDP-forming] [Setaria italica]
IRGSP Os09t0422500-01_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 360 1 360 e-155 293.1 83.1 86.7
Subject 1055 1 334
Annot
Sbicolor Sobic.002G205500.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 360 1 360 e-163 291.4 83.3 85.8
Subject 1049 1 329
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00039.1.g02860.1.am.mk length: 360 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50089 ZF_RING_2 8.904 37-83
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 6e-29 122-143
IPR027934 Cellulose synthase, RING-type zinc finger
HMMPfam PF14569 zf-UDP 1.7e-37 26-92
no_ID  
HMMPanther PTHR13301 X-BOX 1.4e-122 16-359
HMMPanther PTHR13301:SF21 CELLULOSE 1.4e-122 16-359
Seg seg seg NA 41-52
128-142
295-308
superfamily SSF57850 RING/U-box 6.4e-35 19-91
Pseudomolecule
Chromosome Start End Strand
191399363913995024+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00039.1 maker_non_over exon 1201107 1201380 . - . ID=Zjn_sc00039.1.g02860.1.am.mk:exon:4
Zjn_sc00039.1 maker_non_over exon 1201503 1201623 . - . ID=Zjn_sc00039.1.g02860.1.am.mk:exon:3
Zjn_sc00039.1 maker_non_over exon 1201726 1201822 . - . ID=Zjn_sc00039.1.g02860.1.am.mk:exon:2
Zjn_sc00039.1 maker_non_over exon 1201902 1202492 . - . ID=Zjn_sc00039.1.g02860.1.am.mk:exon:1

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