Z. japonica Nagirizaki
Zjn_sc00039.1.g01580.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G01940.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 650 135 331 6e-83 68.5 21.7 24.5
Subject 445 35 229
Annot | Symbols: SGR5, ATIDD15 | C2H2-like zinc finger protein | chr2:432652-434917 FORWARD LENGTH=445
NR gb|EAZ44937.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 650 109 299 2e-94 77.5 26.3 27.4
Subject 504 1 193
Annot hypothetical protein OsJ_29579 [Oryza sativa Japonica Group]
IRGSP Os08t0467100-02_chr08_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 650 109 313 1e-89 82 26 27.4
Subject 533 1 205
Annot
Sbicolor Sobic.002G221400.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 650 109 299 3e-96 76.8 26.5 27.2
Subject 499 1 194
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00039.1.g01580.1.am.mk length: 650 aa.
IPR007087 Zinc finger, C2H2
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 175-195
ProfileScan PS50157 ZINC_FINGER_C2H2_2 11.635 173-195
IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function GO:0003676 nucleic acid binding    
Gene3D G3DSA:3.30.160.60 no description 0.00032 172-195
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 2.3e+02 173-195
215-245
251-278
no_ID  
Coil coil coiled-coil NA 562-611
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 2.2e-70 144-294
HMMPanther PTHR10593:SF17 SUBFAMILY 2.2e-70 144-294
Seg seg seg NA 135-153
307-314
340-357
411-450
475-484
499-511
540-551
572-586
superfamily SSF57667 C2H2 2.9e-07 171-272
Pseudomolecule
Chromosome Start End Strand
191449870614506113+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00039.1 maker_non_over exon 690018 690804 . - . ID=Zjn_sc00039.1.g01580.1.am.mk:exon:10
Zjn_sc00039.1 maker_non_over exon 690991 691100 . - . ID=Zjn_sc00039.1.g01580.1.am.mk:exon:9
Zjn_sc00039.1 maker_non_over exon 691268 691372 . - . ID=Zjn_sc00039.1.g01580.1.am.mk:exon:8
Zjn_sc00039.1 maker_non_over exon 691440 691527 . - . ID=Zjn_sc00039.1.g01580.1.am.mk:exon:7
Zjn_sc00039.1 maker_non_over exon 691706 692108 . - . ID=Zjn_sc00039.1.g01580.1.am.mk:exon:6
Zjn_sc00039.1 maker_non_over exon 692242 692420 . - . ID=Zjn_sc00039.1.g01580.1.am.mk:exon:5
Zjn_sc00039.1 maker_non_over exon 695218 695338 . - . ID=Zjn_sc00039.1.g01580.1.am.mk:exon:4
Zjn_sc00039.1 maker_non_over exon 695546 695598 . - . ID=Zjn_sc00039.1.g01580.1.am.mk:exon:3
Zjn_sc00039.1 maker_non_over exon 696235 696289 . - . ID=Zjn_sc00039.1.g01580.1.am.mk:exon:2
Zjn_sc00039.1 maker_non_over exon 697374 697425 . - . ID=Zjn_sc00039.1.g01580.1.am.mk:exon:1

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