Z. japonica Nagirizaki
Zjn_sc00039.1.g01450.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G21880.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 645 241 593 e-100 64.5 28.7 37.5
Subject 416 8 354
Annot | Symbols: LYM1 | lysm domain GPI-anchored protein 1 precursor | chr1:7680689-7682526 FORWARD LENGTH=416
NR ref|XP_002460313.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 645 261 643 e-169 63.4 49.5 53.3
Subject 409 32 408
Annot hypothetical protein SORBIDRAFT_02g026330 [Sorghum bicolor] gi|241923690|gb|EER96834.1| hypothetical protein SORBIDRAFT_02g026330 [Sorghum bicolor]
IRGSP Os09t0452200-02_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 645 261 643 e-167 62.2 47.1 52.4
Subject 401 24 400
Annot
Sbicolor Sobic.002G222500.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 645 261 643 e-172 63.4 49.5 53.3
Subject 409 32 408
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00039.1.g01450.1.am.mk length: 645 aa.
IPR018392 Peptidoglycan-binding lysin domain
method AccNumber shortName E-value location
Biological Process GO:0016998 cell wall macromolecule catabolic process    
HMMPfam PF01476 LysM 2e-08 414-456
HMMSmart SM00257 Lysin 6.9e-09 344-394
413-456
no_ID  
Gene3D G3DSA:3.10.350.10 no description 7.3e-11 412-457
Seg seg seg NA 4-15
238-252
378-387
511-524
562-577
607-623
superfamily SSF54106 LysM 0.012 411-458
342-396
Pseudomolecule
Chromosome Start End Strand
191454171314547293+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00039.1 maker_non_over exon 648838 649079 . - . ID=Zjn_sc00039.1.g01450.1.am.mk:exon:10
Zjn_sc00039.1 maker_non_over exon 649205 649236 . - . ID=Zjn_sc00039.1.g01450.1.am.mk:exon:9
Zjn_sc00039.1 maker_non_over exon 649341 649511 . - . ID=Zjn_sc00039.1.g01450.1.am.mk:exon:8
Zjn_sc00039.1 maker_non_over exon 649613 649730 . - . ID=Zjn_sc00039.1.g01450.1.am.mk:exon:7
Zjn_sc00039.1 maker_non_over exon 651452 652152 . - . ID=Zjn_sc00039.1.g01450.1.am.mk:exon:6
Zjn_sc00039.1 maker_non_over exon 652297 652433 . - . ID=Zjn_sc00039.1.g01450.1.am.mk:exon:5
Zjn_sc00039.1 maker_non_over exon 652520 652674 . - . ID=Zjn_sc00039.1.g01450.1.am.mk:exon:4
Zjn_sc00039.1 maker_non_over exon 652966 653133 . - . ID=Zjn_sc00039.1.g01450.1.am.mk:exon:3
Zjn_sc00039.1 maker_non_over exon 653482 653621 . - . ID=Zjn_sc00039.1.g01450.1.am.mk:exon:2
Zjn_sc00039.1 maker_non_over exon 654345 654418 . - . ID=Zjn_sc00039.1.g01450.1.am.mk:exon:1

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