Z. japonica Nagirizaki
Zjn_sc00039.1.g00780.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G65420.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 402 108 375 6e-65 76.6 31.6 44.5
Subject 308 43 301
Annot | Symbols: CYCD4;1 | CYCLIN D4;1 | chr5:26141592-26143750 REVERSE LENGTH=308
NR ref|XP_004957066.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 402 58 402 e-138 87.3 67.2 72.1
Subject 351 3 351
Annot PREDICTED: cyclin-D4-1 [Setaria italica]
IRGSP Os09t0466100-01_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 402 61 402 e-124 88.6 63.4 70.4
Subject 356 7 356
Annot
Sbicolor Sobic.002G230900.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 402 61 402 e-126 94 64.9 71.4
Subject 378 7 378
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00039.1.g00780.1.am.mk length: 402 aa.
IPR004367 Cyclin, C-terminal domain
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
HMMPfam PF02984 Cyclin_C 3.8e-06 244-333
IPR006671 Cyclin, N-terminal
HMMPfam PF00134 Cyclin_N 1e-29 112-241
PatternScan PS00292 CYCLINS NA 142-173
IPR013763 Cyclin-like
Gene3D G3DSA:1.10.472.10 no description 1.4e-05 133-235
236-299
HMMSmart SM00385 domain 1.9e-16 147-235
superfamily SSF47954 Cyclin-like 1.9e-37 106-242
IPR014400 Cyclin A/B/D/E
Biological Process GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity    
Molecular Function GO:0019901 protein kinase binding    
Biological Process GO:0051726 regulation of cell cycle    
HMMPIR PIRSF001771 Cyclin, 0.0027 1-364
no_ID  
HMMPanther PTHR10177 CYCLINE 3.7e-105 62-402
HMMPanther PTHR10177:SF76 CYCLIN-D 3.7e-105 62-402
Seg seg seg NA 42-52
82-103
293-301
347-358
Pseudomolecule
Chromosome Start End Strand
191487940314881305+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00039.1 maker_non_over exon 314826 315077 . - . ID=Zjn_sc00039.1.g00780.1.am.mk:exon:7
Zjn_sc00039.1 maker_non_over exon 315335 315450 . - . ID=Zjn_sc00039.1.g00780.1.am.mk:exon:6
Zjn_sc00039.1 maker_non_over exon 315534 315735 . - . ID=Zjn_sc00039.1.g00780.1.am.mk:exon:5
Zjn_sc00039.1 maker_non_over exon 315826 315924 . - . ID=Zjn_sc00039.1.g00780.1.am.mk:exon:4
Zjn_sc00039.1 maker_non_over exon 316009 316095 . - . ID=Zjn_sc00039.1.g00780.1.am.mk:exon:3
Zjn_sc00039.1 maker_non_over exon 316194 316467 . - . ID=Zjn_sc00039.1.g00780.1.am.mk:exon:2
Zjn_sc00039.1 maker_non_over exon 316550 316728 . - . ID=Zjn_sc00039.1.g00780.1.am.mk:exon:1

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