Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00038.1.g02920.1.sm.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00038.1)

BLAST

TAIR10	AT5G07740.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	165	4	127	2e-33	999.4	45.5	58.8
		Subject	1649	1496	1634
		Annot	\| Symbols: \| actin binding \| chr5:2459076-2466580 REVERSE LENGTH=1649
NR	ref\|XP_010237115.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	165	5	138	8e-49	1224.2	63.6	73.3
		Subject	2020	1859	2007
		Annot	PREDICTED: formin-like protein 12 isoform X1 [Brachypodium distachyon]
IRGSP	Os07t0596300-01_chr07_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	165	4	146	7e-35	449.1	50.9	64.2
		Subject	741	563	726
		Annot
Sbicolor	Sobic.008G141100.2.p\|Chr08\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	165	5	139	7e-43	1066.1	64.2	72.1
		Subject	1759	1597	1746
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR015425	Formin, FH2 domain
Zjn_sc00038.1.g02920.1.sm.mk				length: 165 aa.
method	AccNumber	shortName	E-value	location
ProfileScan	PS51444	FH2	9.615	1-128
superfamily	SSF101447	Formin	3.5e-17	3-134
IPR027643	Formin-like family, viridiplantae
Cellular Component	GO:0005884	actin filament
Biological Process	GO:0045010	actin nucleation
HMMPanther	PTHR23213:SF18	FORMIN-RELATED	3.3e-47	5-134
no_ID
Coil	coil	coiled-coil	NA	24-45 103-133
HMMPanther	PTHR23213	FORMIN-RELATED	3.3e-47	5-134
Seg	seg	seg	NA	20-33 114-128

Pseudomolecule

Chromosome	Start	End	Strand
16	6576449	6585167	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00038.1	maker_non_over	exon	2072915	2072983	.	-	.	ID=Zjn_sc00038.1.g02920.1.sm.mk:exon:8
Zjn_sc00038.1	maker_non_over	exon	2077331	2077357	.	-	.	ID=Zjn_sc00038.1.g02920.1.sm.mk:exon:7
Zjn_sc00038.1	maker_non_over	exon	2077729	2077859	.	-	.	ID=Zjn_sc00038.1.g02920.1.sm.mk:exon:6
Zjn_sc00038.1	maker_non_over	exon	2078401	2078467	.	-	.	ID=Zjn_sc00038.1.g02920.1.sm.mk:exon:5
Zjn_sc00038.1	maker_non_over	exon	2078573	2078608	.	-	.	ID=Zjn_sc00038.1.g02920.1.sm.mk:exon:4
Zjn_sc00038.1	maker_non_over	exon	2078752	2078856	.	-	.	ID=Zjn_sc00038.1.g02920.1.sm.mk:exon:3
Zjn_sc00038.1	maker_non_over	exon	2080518	2080559	.	-	.	ID=Zjn_sc00038.1.g02920.1.sm.mk:exon:2
Zjn_sc00038.1	maker_non_over	exon	2081613	2081633	.	-	.	ID=Zjn_sc00038.1.g02920.1.sm.mk:exon:1