Z. japonica Nagirizaki
Zjn_sc00038.1.g02650.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G46510.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 657 31 640 0.0 100.5 55.4 70.3
Subject 660 24 657
Annot | Symbols: PUB13, ATPUB13 | plant U-box 13 | chr3:17124106-17126539 REVERSE LENGTH=660
NR ref|XP_004962703.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 657 27 656 0.0 103.3 84.9 89.3
Subject 679 27 678
Annot PREDICTED: protein spotted leaf 11-like [Setaria italica]
IRGSP Os12t0570000-01_chr12_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 657 141 656 0.0 78.7 68 73.2
Subject 517 1 516
Annot
Sbicolor Sobic.001G420500.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 657 31 615 0.0 113.7 57.8 68.9
Subject 747 68 672
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00038.1.g02650.1.sm.mkhc length: 657 aa.
IPR000225 Armadillo
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00514 Arm 2.3e-06 363-401
404-442
446-483
HMMSmart SM00185 Armadillo/beta-catenin-like 4.7e+02 362-402
403-443
444-484
526-566
ProfileScan PS50176 ARM_REPEAT 13.212 373-415
IPR003613 U box domain
Cellular Component GO:0000151 ubiquitin ligase complex    
Molecular Function GO:0004842 ubiquitin-protein ligase activity    
Biological Process GO:0016567 protein ubiquitination    
HMMPfam PF04564 U-box 2.1e-21 236-307
HMMSmart SM00504 Modified 5.3e-32 239-303
IPR011989 Armadillo-like helical
Gene3D G3DSA:1.25.10.10 no description 2.1e-52 332-612
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 3.3e-31 235-309
IPR016024 Armadillo-type fold
Molecular Function GO:0005488 binding    
superfamily SSF48371 ARM 3.9e-49 332-636
no_ID  
Coil coil coiled-coil NA 54-75
HMMPanther PTHR23315 BETA 1.2e-147 31-622
HMMPanther PTHR23315:SF7 ANKYRIN-REPEAT-ARM 1.2e-147 31-622
Seg seg seg NA 13-28
54-90
377-387
615-629
superfamily SSF57850 RING/U-box 8.3e-28 218-316
Pseudomolecule
Chromosome Start End Strand
1664255006431697-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00038.1 maker exon 1921966 1923756 . - . ID=Zjn_sc00038.1.g02650.1.sm.mkhc:exon:4
Zjn_sc00038.1 maker exon 1923829 1924245 . - . ID=Zjn_sc00038.1.g02650.1.sm.mkhc:exon:3
Zjn_sc00038.1 maker exon 1924354 1924419 . - . ID=Zjn_sc00038.1.g02650.1.sm.mkhc:exon:2
Zjn_sc00038.1 maker exon 1927867 1928163 . - . ID=Zjn_sc00038.1.g02650.1.sm.mkhc:exon:1

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