Z. japonica Nagirizaki
Zjn_sc00038.1.g02440.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G53580.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 350 30 349 e-148 103.4 69.7 77.4
Subject 362 42 361
Annot | Symbols: | diaminopimelate epimerase family protein | chr3:19864784-19866907 FORWARD LENGTH=362
NR ref|XP_003578811.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 350 16 350 e-171 101.4 82.9 90.3
Subject 355 20 355
Annot PREDICTED: diaminopimelate epimerase, chloroplastic [Brachypodium distachyon] gi|721673234|ref|XP_010237137.1| PREDICTED: diaminopimelate epimerase, chloroplastic [Brachypodium distachyon]
IRGSP No_hits
Sbicolor Sobic.008G133600.1.p|Chr08|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 350 19 349 e-163 101.1 82 85.7
Subject 354 22 353
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00038.1.g02440.1.sm.mkhc length: 350 aa.
IPR001653 Diaminopimelate epimerase, DapF
method AccNumber shortName E-value location
Molecular Function GO:0008837 diaminopimelate epimerase activity    
Biological Process GO:0009089 lysine biosynthetic process via diaminopimelate    
HAMAP MF_00197 DAP_epimerase 38.315 66-350
HMMPfam PF01678 DAP_epimerase 4.9e-31 68-187
222-342
HMMTigr TIGR00652 DapF: 1.8e-95 67-348
IPR018510 Diaminopimelate epimerase, active site
Cellular Component GO:0005737 cytoplasm    
Molecular Function GO:0008837 diaminopimelate epimerase activity    
Biological Process GO:0009089 lysine biosynthetic process via diaminopimelate    
PatternScan PS01326 DAP_EPIMERASE NA 129-143
no_ID  
Gene3D G3DSA:3.10.310.10 no description 2.8e-53 58-184
185-338
HMMPanther PTHR31689 FAMILY 7.4e-156 36-350
HMMPanther PTHR31689:SF0 SUBFAMILY 7.4e-156 36-350
Seg seg seg NA 4-20
297-305
superfamily SSF54506 Diaminopimelate 1.7e-46 201-348
66-196
Pseudomolecule
Chromosome Start End Strand
1663450216350008+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00038.1 maker exon 1841487 1841770 . + . ID=Zjn_sc00038.1.g02440.1.sm.mkhc:exon:1
Zjn_sc00038.1 maker exon 1842164 1842331 . + . ID=Zjn_sc00038.1.g02440.1.sm.mkhc:exon:2
Zjn_sc00038.1 maker exon 1843060 1843130 . + . ID=Zjn_sc00038.1.g02440.1.sm.mkhc:exon:3
Zjn_sc00038.1 maker exon 1843455 1843512 . + . ID=Zjn_sc00038.1.g02440.1.sm.mkhc:exon:4
Zjn_sc00038.1 maker exon 1844121 1844300 . + . ID=Zjn_sc00038.1.g02440.1.sm.mkhc:exon:5
Zjn_sc00038.1 maker exon 1844903 1844987 . + . ID=Zjn_sc00038.1.g02440.1.sm.mkhc:exon:6
Zjn_sc00038.1 maker exon 1845075 1845134 . + . ID=Zjn_sc00038.1.g02440.1.sm.mkhc:exon:7
Zjn_sc00038.1 maker exon 1845430 1845503 . + . ID=Zjn_sc00038.1.g02440.1.sm.mkhc:exon:8
Zjn_sc00038.1 maker exon 1845588 1845704 . + . ID=Zjn_sc00038.1.g02440.1.sm.mkhc:exon:9
Zjn_sc00038.1 maker exon 1845794 1846149 . + . ID=Zjn_sc00038.1.g02440.1.sm.mkhc:exon:10
Zjn_sc00038.1 maker exon 1846257 1846474 . + . ID=Zjn_sc00038.1.g02440.1.sm.mkhc:exon:11

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