Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00037.1.g05210.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00037.1)

BLAST

TAIR10	AT1G15960.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	242	1	174	2e-44	217.8	41.3	55.4
		Subject	527	184	422
		Annot	\| Symbols: NRAMP6, ATNRAMP6 \| NRAMP metal ion transporter 6 \| chr1:5482202-5485066 REVERSE LENGTH=527
NR	ref\|NP_001045794.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	242	1	242	e-100	225.2	87.2	93
		Subject	545	197	545
		Annot	Os02g0131800 [Oryza sativa Japonica Group] gi\|75135687\|sp\|Q6ZG85.1\|NRAT1_ORYSJ RecName: Full=Metal transporter NRAT1; AltName: Full=Protein NRAMP ALUMINUM TRANSPORTER 1 gi\|41052570\|dbj\|BAD07752.1\| putative root-specific metal transporter [Oryza sativa Japonica Group] gi\|113535325\|dbj\|BAF07708.1\| Os02g0131800 [Oryza sativa Japonica Group] gi\|222622112\|gb\|EEE56244.1\| hypothetical protein OsJ_05257 [Oryza sativa Japonica Group] gi\|308522664\|dbj\|BAJ22943.1\| Nramp aluminum transporter 1 [Oryza sativa Japonica Group]
IRGSP	Os02t0131800-01_chr02_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	242	1	242	e-103	225.2	87.2	93
		Subject	545	197	545
		Annot
Sbicolor	Sobic.004G029900.1.p\|Chr04\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	242	1	242	1e-91	226	78.9	88
		Subject	547	198	547
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR001046	Natural resistance-associated macrophage like
Zjn_sc00037.1.g05210.1.sm.mkhc				length: 242 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005215	transporter activity
Biological Process	GO:0006810	transport
Cellular Component	GO:0016020	membrane
HMMPanther	PTHR11706	MANGANESE	9.9e-80	1-242
HMMPfam	PF01566	Nramp	4.3e-16	1-50 95-167
no_ID
HMMPanther	PTHR11706:SF10	METAL	9.9e-80	1-242
Seg	seg	seg	NA	30-45 56-77 177-194

Pseudomolecule

Chromosome	Start	End	Strand
8	-947636	-945647	+

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00037.1	maker	exon	2451757	2451981	.	-	.	ID=Zjn_sc00037.1.g05210.1.sm.mkhc:exon:5
Zjn_sc00037.1	maker	exon	2452232	2452300	.	-	.	ID=Zjn_sc00037.1.g05210.1.sm.mkhc:exon:4
Zjn_sc00037.1	maker	exon	2452393	2452524	.	-	.	ID=Zjn_sc00037.1.g05210.1.sm.mkhc:exon:3
Zjn_sc00037.1	maker	exon	2452866	2453028	.	-	.	ID=Zjn_sc00037.1.g05210.1.sm.mkhc:exon:2
Zjn_sc00037.1	maker	exon	2453607	2453746	.	-	.	ID=Zjn_sc00037.1.g05210.1.sm.mkhc:exon:1