Z. japonica Nagirizaki
Zjn_sc00037.1.g04680.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G20730.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 138 40 125 3e-30 843.5 42.8 47.8
Subject 1164 1072 1157
Annot | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related | chr5:7016704-7021504 REVERSE LENGTH=1164
NR ref|XP_004951920.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 138 40 138 5e-51 821 67.4 68.1
Subject 1133 1035 1133
Annot PREDICTED: auxin response factor 5-like [Setaria italica]
IRGSP Os02t0141100-00_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 138 40 138 1e-50 808.7 64.5 65.2
Subject 1116 1018 1116
Annot
Sbicolor Sobic.004G037800.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 138 40 138 8e-54 828.3 66.7 68.1
Subject 1143 1045 1143
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00037.1.g04680.1.sm.mk length: 138 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 3.9e-14 42-94
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 15.333 29-88
no_ID  
HMMPanther PTHR31384 FAMILY 4.8e-19 42-132
Pseudomolecule
Chromosome Start End Strand
8-740325-738462-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00037.1 maker_non_over exon 2244572 2244695 . + . ID=Zjn_sc00037.1.g04680.1.sm.mk:exon:1
Zjn_sc00037.1 maker_non_over exon 2245871 2245964 . + . ID=Zjn_sc00037.1.g04680.1.sm.mk:exon:2
Zjn_sc00037.1 maker_non_over exon 2246237 2246435 . + . ID=Zjn_sc00037.1.g04680.1.sm.mk:exon:3

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