Z. japonica Nagirizaki
Zjn_sc00037.1.g03520.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G32260.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 225 46 197 6e-54 147.6 52 56.9
Subject 332 30 272
Annot | Symbols: ATCCT1, CCT1 | phosphorylcholine cytidylyltransferase | chr2:13697645-13700241 FORWARD LENGTH=332
NR ref|XP_004951755.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 225 3 206 7e-79 141.8 81.3 84.4
Subject 319 4 299
Annot PREDICTED: choline-phosphate cytidylyltransferase 1 [Setaria italica]
IRGSP Os02t0173500-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 225 25 206 8e-73 140 67.6 72.4
Subject 315 27 298
Annot
Sbicolor Sobic.004G058200.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 225 2 225 2e-81 141.3 83.6 89.8
Subject 318 5 318
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00037.1.g03520.1.sm.mkhc length: 225 aa.
IPR014729 Rossmann-like alpha/beta/alpha sandwich fold
method AccNumber shortName E-value location
Gene3D G3DSA:3.40.50.620 no description 2.3e-05 50-76
77-115
no_ID  
HMMPanther PTHR10739 CYTIDYLYLTRANSFERASE 1e-41 41-200
HMMPanther PTHR10739:SF13 CHOLINE-PHOSPHATE 1e-41 41-200
Seg seg seg NA 206-218
superfamily SSF52374 Nucleotidylyl 1.6e-09 50-190
Pseudomolecule
Chromosome Start End Strand
8-197922-193946-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00037.1 maker exon 1700056 1700360 . + . ID=Zjn_sc00037.1.g03520.1.sm.mkhc:exon:1
Zjn_sc00037.1 maker exon 1701798 1701893 . + . ID=Zjn_sc00037.1.g03520.1.sm.mkhc:exon:2
Zjn_sc00037.1 maker exon 1702105 1702147 . + . ID=Zjn_sc00037.1.g03520.1.sm.mkhc:exon:3
Zjn_sc00037.1 maker exon 1702549 1702629 . + . ID=Zjn_sc00037.1.g03520.1.sm.mkhc:exon:4
Zjn_sc00037.1 maker exon 1703267 1703365 . + . ID=Zjn_sc00037.1.g03520.1.sm.mkhc:exon:5
Zjn_sc00037.1 maker exon 1703455 1704032 . + . ID=Zjn_sc00037.1.g03520.1.sm.mkhc:exon:6

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